NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:915027     UniGene Hs.524280     Homo sapiens (human)   H2AFJ
H2A histone family, member J (H2AFJ)

Human protein-coding gene H2AFJ. Represented by 342 ESTs from 160 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 915027 - Hs.524280]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_808356.1 histone H2A.J M. musculus 100.0 128
XP_001090149.2 PREDICTED: histone H2A.J-like M. mulatta 100.0 128
XP_003906098.1 PREDICTED: histone H2A.J-like P. anubis 100.0 128
XP_003313562.1 PREDICTED: histone H2A.J P. troglodytes 100.0 128
NP_808760.1 H2AFJ gene product H. sapiens 100.0 128
XP_543796.1 PREDICTED: histone H2A.J C. lupus familiaris 100.0 128
NP_001071557.1 H2AFJ gene product B. taurus 100.0 128
XP_004006885.1 PREDICTED: histone H2A.J-like O. aries 100.0 128
XP_002712698.1 PREDICTED: histone cluster 1, H2ag-like O. cuniculus 100.0 128
NP_001087948.1 histone cluster 1, H2aj X. laevis 96.9 129
NP_001005967.1 zgc:101846 gene product D. rerio 96.9 127
XP_959442.1 histone H2A N. crassa 92.3 130
NP_724343.1 histone H2A D. melanogaster 91.9 123
NP_492642.1 Protein HIS-68 C. elegans 88.2 126
NP_010511.3 Hta1p S. cerevisiae 85.4 130
XP_001691545.1 histone H2A C. reinhardtii 83.6 128
NP_175517.1 histone H2A 10 A. thaliana 79.4 131
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
XP_001363204.1 PREDICTED: histone H2A type 1-like M. domestica 99.2 129
XP_003224525.1 PREDICTED: histone H2A type 2-C-like A. carolinensis 99.2 128

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; prostate; mammary gland; lung; cervix; adipose tissue; intestine; kidney; stomach; mixed; eye; placenta; skin; uncharacterized tissue; vascular; umbilical cord; larynx; bladder; trachea; pineal gland; thymus; muscle; uterus; heart; lymph node; embryonic tissue; bone; adrenal gland; blood; ascites; parathyroid; connective tissue; ovary; pancreas; thyroid; liver; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12p12.3
UniSTS entry: Chr 12 STS-H53100
UniSTS entry: Chr 12 RH47272
UniSTS entry: Chr 12 RH46157
UniSTS entry: Chr 12 A004M21
UniSTS entry: Chr 12 RH44875
UniSTS entry: Chr 12 H2AFJ_1740
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_177925.2 Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 1, mRNA PA
AL133626.1 Homo sapiens mRNA; cDNA DKFZp434K0522 (from clone DKFZp434K0522) PA
BC003602.1 Homo sapiens H2A histone family, member J, mRNA (cDNA clone MGC:921 IMAGE:3354610), complete cds PA
NR_027716.1 Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, non-coding RNA PA

EST sequences (10 of 342) [Show all sequences]

AA962566.1 Clone IMAGE:1553626 kidney 3' read A
AA975581.1 Clone IMAGE:1588902 kidney 3' read PA
AA975585.1 Clone IMAGE:1588910 kidney 3' read A
AA989504.1 Clone IMAGE:1606276 kidney 3' read A
AA992585.1 Clone IMAGE:1624737 embryonic tissue 3' read A
AA994793.1 Clone IMAGE:1631655 mammary gland 3' read A
AI004565.1 Clone IMAGE:1620636 testis 3' read A
AI018816.1 Clone IMAGE:1624121 embryonic tissue 3' read A
AI024179.1 Clone IMAGE:1642979 testis 3' read A
AI024268.1 Clone IMAGE:1642997 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help