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UGID:915027     UniGene Hs.524280     Homo sapiens (human)   H2AFJ
H2A histone family, member J (H2AFJ)

Human protein-coding gene H2AFJ. Represented by 342 ESTs from 160 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 915027 - Hs.524280]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_808356.1 histone H2A.J M. musculus 100.0 128
XP_001090149.2 PREDICTED: histone H2A.J-like M. mulatta 100.0 128
XP_003906098.1 PREDICTED: histone H2A.J-like P. anubis 100.0 128
XP_003313562.1 PREDICTED: histone H2A.J P. troglodytes 100.0 128
NP_808760.1 H2AFJ gene product H. sapiens 100.0 128
XP_543796.1 PREDICTED: histone H2A.J C. lupus familiaris 100.0 128
NP_001071557.1 H2AFJ gene product B. taurus 100.0 128
XP_004006885.1 PREDICTED: histone H2A.J-like O. aries 100.0 128
XP_002712698.1 PREDICTED: histone cluster 1, H2ag-like O. cuniculus 100.0 128
NP_001087948.1 histone cluster 1, H2aj X. laevis 96.9 129
NP_001005967.1 zgc:101846 gene product D. rerio 96.9 127
XP_959442.1 histone H2A N. crassa 92.3 130
NP_724343.1 histone H2A D. melanogaster 91.9 123
NP_492642.1 Protein HIS-68 C. elegans 88.2 126
NP_010511.3 Hta1p S. cerevisiae 85.4 130
XP_001691545.1 histone H2A C. reinhardtii 83.6 128
NP_175517.1 histone H2A 10 A. thaliana 79.4 131
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
XP_001363204.1 PREDICTED: histone H2A type 1-like M. domestica 99.2 129
XP_003224525.1 PREDICTED: histone H2A type 2-C-like A. carolinensis 99.2 128

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; prostate; mammary gland; lung; cervix; adipose tissue; intestine; kidney; stomach; mixed; eye; placenta; skin; uncharacterized tissue; vascular; umbilical cord; larynx; bladder; trachea; pineal gland; thymus; muscle; uterus; heart; lymph node; embryonic tissue; bone; adrenal gland; blood; ascites; parathyroid; connective tissue; ovary; pancreas; thyroid; liver; nerve
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12p12.3
UniSTS entry: Chr 12 STS-H53100
UniSTS entry: Chr 12 RH47272
UniSTS entry: Chr 12 RH46157
UniSTS entry: Chr 12 A004M21
UniSTS entry: Chr 12 RH44875
UniSTS entry: Chr 12 H2AFJ_1740
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_177925.2 Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 1, mRNA PA
AL133626.1 Homo sapiens mRNA; cDNA DKFZp434K0522 (from clone DKFZp434K0522) PA
BC003602.1 Homo sapiens H2A histone family, member J, mRNA (cDNA clone MGC:921 IMAGE:3354610), complete cds PA
NR_027716.1 Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, non-coding RNA PA

EST sequences (10 of 342) [Show all sequences]

AA962566.1 Clone IMAGE:1553626 kidney 3' read A
AA975581.1 Clone IMAGE:1588902 kidney 3' read PA
AA975585.1 Clone IMAGE:1588910 kidney 3' read A
AA989504.1 Clone IMAGE:1606276 kidney 3' read A
AA992585.1 Clone IMAGE:1624737 embryonic tissue 3' read A
AA994793.1 Clone IMAGE:1631655 mammary gland 3' read A
AI004565.1 Clone IMAGE:1620636 testis 3' read A
AI018816.1 Clone IMAGE:1624121 embryonic tissue 3' read A
AI024179.1 Clone IMAGE:1642979 testis 3' read A
AI024268.1 Clone IMAGE:1642997 testis 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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