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UGID:907421     UniGene Hs.516674     Homo sapiens (human)   SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 (SMARCAL1)

Human protein-coding gene SMARCAL1. Represented by 246 ESTs from 153 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 907421 - Hs.516674]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001153008.1 PREDICTED: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 isoform 3 P. troglodytes 100.0 953
NP_001120679.1 SMARCAL1 gene product H. sapiens 100.0 953
NP_061287.2 Smarcal1 gene product M. musculus 84.2 909
NP_001120938.1 smarcal1 gene product D. rerio 72.1 666
NP_001089668.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 X. laevis 71.4 938
NP_498401.2 Protein C16A3.1, isoform b C. elegans 51.8 166
NP_175265.3 chromatin remodeling factor18 A. thaliana 46.8 171
Other hits (2 of 40) [Show all]SpeciesId(%)Len(aa)
XP_003907975.1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1-like, partial P. anubis 98.9 611
XP_001086469.1 PREDICTED: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 isoform 2 M. mulatta 98.7 948

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; uncharacterized tissue; placenta; mixed; lung; mouth; ovary; prostate; ganglia; amniotic fluid; mammary gland; blood; kidney; liver; skin; umbilical cord; spleen; connective tissue; bone marrow; uterus; intestine; embryonic tissue; muscle; lymph; thymus; cervix; trachea; larynx; eye; pancreas; vascular; ascites; adipose tissue; thyroid; lymph node; heart
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q35
UniSTS entry: Chr 2 RH12875 [Map Viewer]
UniSTS entry: Chr 2 G67540
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC043341.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1, mRNA (cDNA clone MGC:49824 IMAGE:6058575), complete cds PA
AK000117.1 Homo sapiens cDNA FLJ20110 fis, clone COL05103 PA
AL122076.1 Homo sapiens mRNA; cDNA DKFZp434B1050 (from clone DKFZp434B1050); partial cds PA
NM_014140.3 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 (SMARCAL1), transcript variant 1, mRNA PA
AF082179.1 Homo sapiens HepA-related protein HARP mRNA, complete cds P
AK023780.1 Homo sapiens cDNA FLJ13718 fis, clone PLACE2000427, weakly similar to PROBABLE HELICASE MOT1 P
BC016482.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1, mRNA (cDNA clone MGC:21866 IMAGE:4341673), complete cds PA
AF432223.1 Homo sapiens SMARCAL1 mRNA, complete cds P
NM_001127207.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 (SMARCAL1), transcript variant 2, mRNA PA
BC029994.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1, mRNA (cDNA clone IMAGE:5111349) PA

EST sequences (10 of 246) [Show all sequences]

AA905988.1 Clone IMAGE:1505487 mixed 3' read PA
AA970196.1 Clone IMAGE:1575158 kidney 3' read PA
AA976002.1 Clone IMAGE:1587734 uncharacterized tissue 3' read PA
AI004566.1 Clone IMAGE:1620642 testis 3' read A
AI015106.1 Clone IMAGE:1624027 embryonic tissue 3' read PA
AI127411.1 Clone IMAGE:1705896 heart 3' read PA
BX104166.1 Clone IMAGp998E155510_;_IMAGE:2227574 pancreas PA
CB139566.1 Clone L15CKK1-15-A12 liver 5' read P
AI337726.1 Clone IMAGE:1998522 brain 3' read PA
CB214981.1 Clone IMAGE:5936538 uterus 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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