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UGID:906222     UniGene Hs.515475     Homo sapiens (human)   SYMPK
Symplekin (SYMPK)

Human protein-coding gene SYMPK. Represented by 622 ESTs from 241 cDNA libraries. Corresponds to reference sequence NM_004819.2. [UniGene 906222 - Hs.515475]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001166898.1 PREDICTED: symplekin isoform 4 P. troglodytes 100.0 1273
NP_004810.2 SYMPK gene product H. sapiens 100.0 1273
XP_003915788.1 PREDICTED: symplekin P. anubis 99.8 1273
XP_001118586.1 PREDICTED: symplekin-like, partial M. mulatta 99.8 910
NP_080881.2 Sympk gene product M. musculus 98.1 1287
NP_001079691.1 symplekin X. laevis 83.2 1137
XP_699475.5 PREDICTED: symplekin D. rerio 80.8 1229
NP_649580.1 symplekin D. melanogaster 56.1 401
NP_195760.1 symplekin A. thaliana 50.9 234
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_533638.2 PREDICTED: symplekin C. lupus familiaris 99.4 1274
XP_003127278.1 PREDICTED: symplekin S. scrofa 99.2 1270

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; placenta; embryonic tissue; uterus; uncharacterized tissue; mammary gland; lung; stomach; liver; blood; intestine; thymus; eye; mixed; mouth; amniotic fluid; esophagus; adrenal gland; spleen; heart; trachea; umbilical cord; thyroid; bladder; bone; connective tissue; ovary; lymph; nerve; bone marrow; lymph node; kidney; skin; prostate; muscle; ascites; pancreas; epididymis; tonsil; cervix; adipose tissue
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.3
UniSTS entry: Chr 19 RH11655 [Map Viewer]
UniSTS entry: Chr 1 Tbxas1
UniSTS entry: Chr 19 G29025
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AK130602.1 Homo sapiens cDNA FLJ27092 fis, clone SPL04282, highly similar to Symplekin P
NM_004819.2 Homo sapiens symplekin (SYMPK), mRNA P
AB210010.1 Homo sapiens mRNA for SYMPK variant protein, partial cds, clone: fh12484 P
BC006567.2 Homo sapiens symplekin, mRNA (cDNA clone IMAGE:2963685), partial cds PA
BC006536.2 Homo sapiens symplekin, mRNA (cDNA clone IMAGE:2963685), partial cds PA
BC030214.1 Homo sapiens symplekin, mRNA (cDNA clone IMAGE:5202004), complete cds PA
AL831859.1 Homo sapiens mRNA; cDNA DKFZp761F0317 (from clone DKFZp761F0317) A
U49240.1 Human symplekin mRNA, complete cds PA
AF049526.1 Homo sapiens symplekin mRNA, partial cds P
U88726.1 Homo sapiens symplekin mRNA, partial cds P
AK300252.1 Homo sapiens cDNA FLJ61705 complete cds, highly similar to Symplekin PA
Y10931.1 H.sapiens mRNA for symplekin P

EST sequences (10 of 622) [Show all sequences]

AA902717.1 Clone IMAGE:1519444 uncharacterized tissue 3' read A
CB045150.1 Clone IMAGE:3218115 intestine 5' read P
CB044994.1 Clone IMAGE:3218164 intestine 3' read PA
CB044995.1 Clone IMAGE:3218164 intestine 5' read P
R27106.1 Clone IMAGE:133381 placenta 5' read
AI251130.1 Clone IMAGE:2004783 pancreas 3' read A
CB129788.1 Clone L12JSHC0-4-E05 liver 5' read P
CB104604.1 Clone S6SNU620-15-G05 ascites 5' read
AA911234.1 Clone IMAGE:1526785 mixed 3' read PA
AI274012.1 Clone IMAGE:1978787 stomach 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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