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UGID:906118     UniGene Hs.515371     Homo sapiens (human)   CAPNS1
Calpain, small subunit 1 (CAPNS1)

Human protein-coding gene CAPNS1. Represented by 1453 ESTs from 452 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 906118 - Hs.515371]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001740.1 CAPNS1 gene product H. sapiens 100.0 267
XP_003915435.1 PREDICTED: calpain small subunit 1 isoform 1 P. anubis 100.0 265
XP_002808235.1 PREDICTED: LOW QUALITY PROTEIN: calpain small subunit 1-like M. mulatta 99.7 319
NP_033925.2 Capns1 gene product M. musculus 96.3 267
NP_001103176.1 capns1b gene product D. rerio 77.0 208
NP_001087910.1 calpain, small subunit 1 X. laevis 70.8 314
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
NP_999483.1 CAPNS1 gene product S. scrofa 98.9 265
XP_853634.1 PREDICTED: calpain small subunit 1 isoform 1 C. lupus familiaris 98.5 270

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; uterus; pancreas; prostate; intestine; mammary gland; skin; eye; uncharacterized tissue; embryonic tissue; testis; kidney; ovary; stomach; placenta; liver; ascites; mouth; connective tissue; bone; mixed; larynx; tonsil; heart; cervix; muscle; thyroid; salivary gland; parathyroid; pharynx; bladder; epididymis; blood; nerve; bone marrow; lymph; pituitary gland; amniotic fluid; lymph node; spleen; umbilical cord; vascular; adrenal gland; thymus; esophagus; ganglia; adipose tissue; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.12
UniSTS entry: Chr 19 STS-X04106 [Map Viewer]
UniSTS entry: Chr 19 D19S640E
UniSTS entry: Chr 19 G13289
UniSTS entry: Chr 19 D19S1102 [Map Viewer]
UniSTS entry: Chr 19 CAPNS1
UniSTS entry: Chr 19 RH69431 [Map Viewer]
UniSTS entry: Chr 19 RH11836 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BT009775.1 Homo sapiens calpain, small subunit 1 mRNA, complete cds P
NM_001749.2 Homo sapiens calpain, small subunit 1 (CAPNS1), transcript variant 1, mRNA PA
BC064998.1 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:75186 IMAGE:5785274), complete cds PA
NM_001003962.1 Homo sapiens calpain, small subunit 1 (CAPNS1), transcript variant 2, mRNA PA
AY007141.1 Homo sapiens clone CDABP0068 mRNA sequence PA
BC000592.2 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:1790 IMAGE:3347146), complete cds PA
BC007779.2 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:12745 IMAGE:4301394), complete cds PA
BC011903.2 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:20290 IMAGE:4120579), complete cds PA
BC017308.2 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:29672 IMAGE:5089022), complete cds PA
BC018931.2 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:14442 IMAGE:4303926), complete cds PA
BC021933.1 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:32094 IMAGE:4872635), complete cds PA
AK289606.1 Homo sapiens cDNA FLJ75451 complete cds, highly similar to Homo sapiens calpain, small subunit 1 (CAPNS1), mRNA P
X04106.1 Human mRNA for calcium dependent protease (small subunit) P
BC023643.2 Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:29704 IMAGE:5017512), complete cds PA

EST sequences (10 of 1453) [Show all sequences]

AA864254.1 Clone IMAGE:1460191 kidney 3' read
AA971525.1 Clone IMAGE:1584397 lung 3' read A
AA976349.1 Clone IMAGE:1589614 kidney 3' read A
AA994853.1 Clone IMAGE:1632045 mammary gland 3' read A
AA995074.1 Clone IMAGE:1631579 mammary gland 3' read A
AI002725.1 Clone IMAGE:1683740 brain 3' read P
AI024596.1 Clone IMAGE:1642479 testis 3' read A
AA948221.1 Clone IMAGE:1587046 uncharacterized tissue 3' read A
AI074880.1 Clone IMAGE:1667076 skin 3' read A
AI092308.1 Clone IMAGE:1683381 parathyroid 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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