NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:720811     UniGene Hs.505652     Homo sapiens (human)   COPZ1
Coatomer protein complex, subunit zeta 1 (COPZ1)

Human protein-coding gene COPZ1. Represented by 1248 ESTs from 428 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 720811 - Hs.505652]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001258665.1 coatomer subunit zeta-1 isoform 4 H. sapiens 100.0 184
NP_062791.1 coatomer subunit zeta-1 M. musculus 100.0 176
NP_001101587.1 Copz1 gene product R. norvegicus 100.0 176
XP_003906551.1 PREDICTED: coatomer subunit zeta-1 P. anubis 100.0 176
XP_848264.1 PREDICTED: coatomer subunit zeta-1 isoform 2 C. lupus familiaris 100.0 176
XP_001504619.1 PREDICTED: coatomer subunit zeta-1-like E. caballus 100.0 176
XP_001927584.1 PREDICTED: coatomer subunit zeta-1 isoform 1 S. scrofa 100.0 176
NP_776707.2 COPZ1 gene product B. taurus 100.0 176
XP_004006322.1 PREDICTED: coatomer subunit zeta-1 O. aries 100.0 176
NP_571583.1 copz1 gene product D. rerio 96.6 176
NP_001085450.1 coatomer protein complex, subunit zeta 1 X. laevis 96.0 176
NP_730188.1 zetaCOP, isoform C D. melanogaster 65.8 160
NP_496338.1 Protein F59E10.3 C. elegans 57.4 182
XP_001701294.1 zeta-cop, subunit of COP-I complex C. reinhardtii 47.5 182
NP_564767.1 coatomer subunit zeta-1 A. thaliana 46.2 170
Other hits (2 of 34) [Show all]SpeciesId(%)Len(aa)
XP_001156445.1 PREDICTED: coatomer subunit zeta-1 P. troglodytes 99.5 197
XP_002711179.1 PREDICTED: coatomer protein complex, subunit zeta 1 O. cuniculus 99.4 176

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uterus; lung; uncharacterized tissue; intestine; testis; mixed; prostate; placenta; kidney; cervix; skin; liver; embryonic tissue; heart; eye; umbilical cord; mammary gland; stomach; pancreas; ovary; connective tissue; lymph node; thymus; bone; blood; bone marrow; ear; salivary gland; thyroid; muscle; pharynx; adrenal gland; bladder; larynx; pituitary gland; trachea; lymph; parathyroid; ascites; vascular; mouth; spleen; nerve; epididymis; esophagus; ganglia; amniotic fluid; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.2-q13.3
UniSTS entry: Chr 12 A002C47
UniSTS entry: Chr 12 G19978
UniSTS entry: Chr 12 NIB1371 [Map Viewer]
UniSTS entry: Chr 12 WI-12593 [Map Viewer]
UniSTS entry: Chr 12 RH78595
UniSTS entry: Chr 12 D12S1927
UniSTS entry: COPZ1
UniSTS entry: RH127044
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AF086911.1 Homo sapiens z-cop mRNA, complete cds P
NM_016057.2 Homo sapiens coatomer protein complex, subunit zeta 1 (COPZ1), transcript variant 1, mRNA PA
AF151878.1 Homo sapiens CGI-120 protein mRNA, complete cds P
AK223188.1 Homo sapiens mRNA for coatomer protein complex, subunit zeta 1 variant, clone: REC05816 PA
AK025956.1 Homo sapiens cDNA: FLJ22303 fis, clone HRC04902, highly similar to AF151878 Homo sapiens CGI-120 protein mRNA PA
AK026190.1 Homo sapiens cDNA: FLJ22537 fis, clone HRC13178, highly similar to AF151878 Homo sapiens CGI-120 protein mRNA PA
AB047848.1 Homo sapiens mRNA for zeta1-COP, complete cds PA
BC002849.2 Homo sapiens coatomer protein complex, subunit zeta 1, mRNA (cDNA clone MGC:3349 IMAGE:3637869), complete cds PA
AK311027.1 Homo sapiens cDNA, FLJ18069 P
AK293377.1 Homo sapiens cDNA FLJ59844 complete cds, highly similar to Coatomer subunit zeta-1 P
AK295325.1 Homo sapiens cDNA FLJ59891 complete cds, moderately similar to Coatomer subunit zeta-1 P
AF161529.1 Homo sapiens HSPC181 mRNA, complete cds PA
NR_073424.1 Homo sapiens coatomer protein complex, subunit zeta 1 (COPZ1), transcript variant 5, non-coding RNA PA
NM_001271736.1 Homo sapiens coatomer protein complex, subunit zeta 1 (COPZ1), transcript variant 4, mRNA PA
NM_001271734.1 Homo sapiens coatomer protein complex, subunit zeta 1 (COPZ1), transcript variant 2, mRNA PA
NM_001271735.1 Homo sapiens coatomer protein complex, subunit zeta 1 (COPZ1), transcript variant 3, mRNA PA

EST sequences (10 of 1248) [Show all sequences]

R14148.1 Clone IMAGE:28507 brain 5' read
AA921719.1 Clone IMAGE:1457186 intestine 3' read A
AA887002.1 Clone IMAGE:1499870 lung 3' read P
AI017296.1 Clone IMAGE:1638597 testis 3' read A
AI022105.1 Clone IMAGE:1650851 parathyroid 3' read A
AI033576.1 Clone IMAGE:1656171 mixed 3' read A
AI038223.1 Clone IMAGE:1663907 skin 3' read A
AI042582.1 Clone IMAGE:1665823 skin 3' read P
AI049935.1 Clone IMAGE:1700589 kidney 3' read A
AA946770.1 Clone IMAGE:1589775 kidney 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help