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UGID:714711     UniGene Hs.499552     Homo sapiens (human)   PTPN20B
Protein tyrosine phosphatase, non-receptor type 20B (PTPN20B)

Human protein-coding gene PTPN20B. Represented by 10 ESTs from 7 cDNA libraries. Corresponds to 10 reference sequences (different isoforms). [UniGene 714711 - Hs.499552]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001035816.1 PTPN20B gene product H. sapiens 100.0 419
XP_001136909.2 PREDICTED: tyrosine-protein phosphatase non-receptor type 20 isoform 1 P. troglodytes 99.8 419
NP_033004.1 Ptpn20 gene product M. musculus 72.2 425
XP_003199779.1 PREDICTED: tyrosine-protein phosphatase non-receptor type 20-like D. rerio 54.4 333
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_003903690.1 PREDICTED: tyrosine-protein phosphatase non-receptor type 20 isoform 1 P. anubis 95.6 410
XP_001109336.1 PREDICTED: tyrosine-protein phosphatase non-receptor type 20-like isoform 7 M. mulatta 95.5 419

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: pancreas; testis; pituitary gland; connective tissue; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q11.22
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (37)

AL050040.1 Homo sapiens mRNA; cDNA DKFZp566K0524 (from clone DKFZp566K0524); partial cds PA
BX648913.1 Homo sapiens mRNA; cDNA DKFZp686N22268 (from clone DKFZp686N22268) A
CR933668.1 Homo sapiens mRNA; cDNA DKFZp781P23155 (from clone DKFZp781P23155) A
BC093750.1 Homo sapiens protein tyrosine phosphatase, non-receptor type 20A, mRNA (cDNA clone MGC:120785 IMAGE:7939595), complete cds P
AY753191.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 isoform a (PTPN20) mRNA, partial cds P
AY704158.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 18 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704157.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 17 (PTPN20) mRNA, complete cds, alternatively spliced
AY704156.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 16 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704155.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 15 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704154.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 14 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704153.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 13 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704152.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 12 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704151.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 11 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704150.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 10 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704149.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 9 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704148.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 8 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704147.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 7 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704146.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 6 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704145.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 5 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704144.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 4 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704143.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 3 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704142.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 2 (PTPN20) mRNA, complete cds, alternatively spliced P
AY704141.1 Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 1 (PTPN20) mRNA, complete cds, alternatively spliced P
NM_001042365.2 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 10, mRNA
NM_001042364.3 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 9, mRNA P
NM_001042363.3 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 8, mRNA P
NM_001042362.2 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 7, mRNA P
NM_001042361.3 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 6, mRNA P
NM_001042360.2 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 5, mRNA P
NM_001042359.2 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 4, mRNA P
NM_001042358.3 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 3, mRNA P
NM_001042357.3 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 1, mRNA P
BC113473.1 Homo sapiens protein tyrosine phosphatase, non-receptor type 20A, mRNA (cDNA clone MGC:142033 IMAGE:8322525), complete cds P
BC036539.2 Homo sapiens cDNA clone IMAGE:5262458, containing frame-shift errors PA
BC143394.1 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B, mRNA (cDNA clone IMAGE:9051900), complete cds P
BC171725.1 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B, mRNA (cDNA clone IMAGE:9051901), complete cds P
NM_015605.7 Homo sapiens protein tyrosine phosphatase, non-receptor type 20B (PTPN20B), transcript variant 2, mRNA P

EST sequences (10)

CD108815.1 Clone IMAGE:30366210 pituitary gland 5' read
DB452530.1 Clone H013057O04 testis 5' read
BG655441.1 pancreas 5' read
BQ008756.1 Clone IMAGE:5840224 connective tissue 3' read A
BQ787020.1 Clone IMAGE:6033302 pancreas 5' read
BU567804.1 Clone IMAGE:6614502 testis 5' read
CA778018.1 Clone IMAGE:6217588 pancreas 3' read
CA778311.1 Clone IMAGE:6217588 pancreas 5' read
AA382728.1 testis 5' read
AA443172.1 Clone IMAGE:811818 mixed 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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