NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:686611     UniGene Hs.471452     Homo sapiens (human)   FARSB
Phenylalanyl-tRNA synthetase, beta subunit (FARSB)

Human protein-coding gene FARSB. Represented by 878 ESTs from 318 cDNA libraries. Corresponds to reference sequence NM_005687.3. [UniGene 686611 - Hs.471452]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001233467.1 FARSB gene product P. troglodytes 100.0 588
NP_005678.3 FARSB gene product H. sapiens 100.0 588
XP_003908049.1 PREDICTED: phenylalanine--tRNA ligase beta subunit P. anubis 99.8 588
NP_035941.2 phenylalanine--tRNA ligase beta subunit M. musculus 96.6 588
NP_001080579.1 phenylalanyl-tRNA synthetase, beta subunit X. laevis 83.7 587
NP_001007769.1 farsb gene product D. rerio 82.5 589
NP_651237.1 CG5706 D. melanogaster 68.9 588
NP_495785.1 Protein FARS-3 C. elegans 67.0 590
NP_177399.1 phenylalanyl-tRNA synthetase beta chain A. thaliana 57.4 597
XP_958826.2 phenylalanyl-tRNA synthetase beta chain N. crassa 53.5 612
NP_013161.1 phenylalanine--tRNA ligase subunit beta S. cerevisiae 52.6 594
XP_001699120.1 hypothetical protein CHLREDRAFT_193500 C. reinhardtii 51.1 182
Other hits (2 of 61) [Show all]SpeciesId(%)Len(aa)
XP_002808073.1 PREDICTED: LOW QUALITY PROTEIN: phenylalanyl-tRNA synthetase beta chain-like M. mulatta 99.4 531
XP_001495456.1 PREDICTED: LOW QUALITY PROTEIN: phenylalanyl-tRNA synthetase beta chain E. caballus 97.6 588

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; connective tissue; testis; uncharacterized tissue; prostate; skin; stomach; placenta; ovary; embryonic tissue; mammary gland; cervix; bone marrow; intestine; liver; eye; lymph node; lung; kidney; mixed; uterus; pharynx; blood; heart; thyroid; muscle; umbilical cord; spleen; bladder; bone; pancreas; esophagus; adrenal gland; thymus; epididymis; parathyroid; salivary gland; ascites; vascular; trachea; lymph; mouth; adipose tissue; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q36.1
UniSTS entry: Chr 2 A002O40
UniSTS entry: Chr 2 G62071
UniSTS entry: Chr 2 HSC2BG052 [Map Viewer]
UniSTS entry: Chr 2 RH47422
UniSTS entry: Chr 2 RH103332
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AF042346.1 Homo sapiens putative phenylalanyl-tRNA synthetase beta-subunit mRNA, complete cds PA
NM_005687.3 Homo sapiens phenylalanyl-tRNA synthetase, beta subunit (FARSB), mRNA P
AK001025.1 Homo sapiens cDNA FLJ10163 fis, clone HEMBA1003568, weakly similar to 52 KD RO PROTEIN
D84430.1 Homo sapiens mRNA for phenylalanyl tRNA synthetase, complete cds P
BC006502.2 Homo sapiens phenylalanyl-tRNA synthetase, beta subunit, mRNA (cDNA clone IMAGE:2820530), partial cds PA
AK055289.1 Homo sapiens cDNA FLJ30727 fis, clone FEBRA2000007, highly similar to Homo sapiens putative phenylalanyl-tRNA synthetase beta-subunit mRNA P
BC017783.1 Homo sapiens phenylalanyl-tRNA synthetase, beta subunit, mRNA (cDNA clone MGC:22277 IMAGE:4664949), complete cds PA
AK291531.1 Homo sapiens cDNA FLJ75460 complete cds, highly similar to Homo sapiens phenylalanine-tRNA synthetase-like, beta subunit, mRNA PA
AK294158.1 Homo sapiens cDNA FLJ57266 complete cds, highly similar to Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) PA
BC022273.1 Homo sapiens phenylalanyl-tRNA synthetase, beta subunit, mRNA (cDNA clone IMAGE:4663369), containing frame-shift errors PA
BC011261.1 Homo sapiens phenylalanyl-tRNA synthetase, beta subunit, mRNA (cDNA clone IMAGE:4178758), containing frame-shift errors A
BC008434.1 Homo sapiens cDNA clone IMAGE:4078272, containing frame-shift errors PA
AF161521.1 Homo sapiens HSPC173 mRNA, complete cds PA
AK316497.1 Homo sapiens cDNA, FLJ79396 complete cds, highly similar to Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) P

EST sequences (10 of 878) [Show all sequences]

AA968855.1 Clone IMAGE:1573819 kidney 3' read PA
AA974306.1 Clone IMAGE:1585956 uncharacterized tissue 3' read PA
AI017995.1 Clone IMAGE:1628343 mixed 3' read P
AI051026.1 Clone IMAGE:1649018 parathyroid 3' read A
AI056505.1 Clone IMAGE:1669545 brain 3' read PA
AI056593.1 Clone IMAGE:1674952 mixed 3' read PA
AI077418.1 Clone IMAGE:1677136 embryonic tissue 3' read PA
AI096693.1 Clone IMAGE:1707445 heart 3' read PA
AI122591.1 Clone IMAGE:1693827 heart 3' read PA
AI125855.1 Clone IMAGE:1737737 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help