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UGID:681595     UniGene Hs.466436     Homo sapiens (human)   GPATCH1
G patch domain containing 1 (GPATCH1)

Human protein-coding gene GPATCH1. Represented by 112 ESTs from 80 cDNA libraries. Corresponds to reference sequence NM_018025.2. [UniGene 681595 - Hs.466436]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060495.2 GPATCH1 gene product H. sapiens 100.0 930
XP_512571.3 PREDICTED: G patch domain-containing protein 1 P. troglodytes 99.6 930
NP_080457.1 G patch domain-containing protein 1 M. musculus 89.9 929
NP_001191052.1 G patch domain containing 1 D. rerio 60.7 973
NP_648669.1 CG8833 D. melanogaster 51.0 251
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_003915344.1 PREDICTED: G patch domain-containing protein 1 P. anubis 98.5 880
XP_001107610.1 PREDICTED: G patch domain-containing protein 1-like M. mulatta 98.3 847

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lymph node; placenta; pharynx; intestine; vascular; uncharacterized tissue; thyroid; muscle; lung; stomach; kidney; embryonic tissue; pancreas; eye; prostate; pituitary gland; skin; uterus; bone marrow; mouth; thymus; testis; mixed; adipose tissue; ascites; connective tissue; bone; mammary gland; ovary; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.11
UniSTS entry: Chr 1 G35510
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK001068.1 Homo sapiens cDNA FLJ10206 fis, clone HEMBA1004972 P
NM_018025.2 Homo sapiens G patch domain containing 1 (GPATCH1), mRNA PA
BC006108.1 Homo sapiens G patch domain containing 1, mRNA (cDNA clone MGC:12961 IMAGE:3029084), complete cds PA
AK292503.1 Homo sapiens cDNA FLJ77796 complete cds, highly similar to Homo sapiens evolutionarily conserved G-patch domain containing protein mRNA P
AK315712.1 Homo sapiens cDNA, FLJ96811, highly similar to Homo sapiens G patch domain containing 1 (GPATC1), mRNA P
AK096005.1 Homo sapiens cDNA FLJ38686 fis, clone KIDNE2000947 P
AK091835.1 Homo sapiens cDNA FLJ34516 fis, clone HLUNG2006671 P
AL834465.1 Homo sapiens mRNA; cDNA DKFZp762I1110 (from clone DKFZp762I1110) PA
AF434677.1 Homo sapiens evolutionarily conserved G-patch domain containing protein mRNA, complete cds PA

EST sequences (10 of 112) [Show all sequences]

BX093358.1 Clone IMAGp998K13695_;_IMAGE:309252 lung A
AI251596.1 Clone IMAGE:1984525 ovary 3' read
AI734013.1 Clone IMAGE:2028448 kidney 3' read A
AI792917.1 Clone IMAGE:2028448 kidney 5' read
CB266180.1 adipose tissue 5' read P
BX343394.2 Clone CS0DC011YA14 uncharacterized tissue 3' read P
BX343395.2 Clone CS0DC011YA14 uncharacterized tissue 5' read P
BX374475.2 Clone CS0DB004YK24 uncharacterized tissue 5' read P
CD252434.1 Clone IMAGE:30374414 brain 5' read P
CD370445.1 Clone UI-H-FT1-bkb-n-04-0-UI lung 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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