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UGID:680801     UniGene Hs.465642     Homo sapiens (human)   SEMA6B
Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B (SEMA6B)

Human protein-coding gene SEMA6B. Represented by 44 ESTs from 31 cDNA libraries. Corresponds to reference sequence NM_032108.3. [UniGene 680801 - Hs.465642]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_115484.2 SEMA6B gene product H. sapiens 100.0 887
NP_001123928.1 Sema6b gene product M. musculus 93.3 885
XP_002660976.1 PREDICTED: semaphorin-6B D. rerio 64.9 863
NP_001089133.1 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D precursor X. laevis 57.5 556
NP_611244.1 Sema-1b, isoform A D. melanogaster 51.7 180
Other hits (2 of 29) [Show all]SpeciesId(%)Len(aa)
XP_002808212.1 PREDICTED: LOW QUALITY PROTEIN: semaphorin-6B-like, partial M. mulatta 97.1 347
XP_002688976.1 PREDICTED: semaphorin-6B B. taurus 95.2 800

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; pharynx; muscle; skin; stomach; blood; uterus; intestine; uncharacterized tissue; eye; mammary gland; liver; prostate; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AY358939.1 Homo sapiens clone DNA80145 semaphorin Z (UNQ1907) mRNA, complete cds PA
AF216389.1 Homo sapiens semaphorin 6B isoform 1 (SEMA6B) mRNA, complete cds P
AB209278.1 Homo sapiens mRNA for semaphorin 6B isoform 3 precursor variant protein P
AB022433.1 Homo sapiens semaZ mRNA for semaphorin Z, complete cds P
AF293363.1 Homo sapiens semaphorin 6B isoform 2 (SEMA6B) mRNA, complete cds P
NM_032108.3 Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B (SEMA6B), mRNA PA
BC142617.1 Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B, mRNA (cDNA clone MGC:164780 IMAGE:40147342), complete cds PA
AK300037.1 Homo sapiens cDNA FLJ60876 complete cds, highly similar to Semaphorin-6B precursor PA
FR839673.1 Homo sapiens mRNA for semaphorin-6Ba (SEMA6B gene) P

EST sequences (10 of 44) [Show all sequences]

AI241912.1 Clone IMAGE:1977567 brain 3' read A
T08532.1 Clone HIBBF82 brain 5' read
AI825930.1 Clone IMAGE:2185745 stomach 3' read A
AI825934.1 Clone IMAGE:2185754 stomach 3' read A
AI936745.1 Clone IMAGE:2467002 brain 3' read A
AI870375.1 Clone IMAGE:2430519 brain 3' read A
AW054434.1 mammary gland
T15790.1 brain 3' read PA
AW835088.1 uncharacterized tissue
AW896194.1 brain


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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