NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:680680     UniGene Hs.465521     Homo sapiens (human)   HMHA1
Histocompatibility (minor) HA-1 (HMHA1)

Human protein-coding gene HMHA1. Represented by 372 ESTs from 134 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 680680 - Hs.465521]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001245257.1 HMHA1 gene product H. sapiens 100.0 1151
NP_001136173.1 Hmha1 gene product M. musculus 89.5 1115
NP_001086672.1 minor histocompatibility protein HA-1 X. laevis 70.5 1106
XP_683585.4 PREDICTED: minor histocompatibility protein HA-1 D. rerio 68.0 1120
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_001117237.2 PREDICTED: minor histocompatibility protein HA-1-like isoform 1 M. mulatta 97.7 1147
XP_003914614.1 PREDICTED: minor histocompatibility protein HA-1 isoform 2 P. anubis 97.7 1147

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; thymus; blood; placenta; lung; lymph node; pancreas; brain; skin; lymph; uterus; connective tissue; cervix; ovary; spleen; intestine; embryonic tissue; testis; thyroid; liver; trachea; tonsil; mixed; prostate; eye; kidney; mammary gland; stomach; bone; ascites; bone marrow
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.3
UniSTS entry: Chr 19 RH25429
UniSTS entry: Chr 19 RH80177
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

BC048129.1 Homo sapiens histocompatibility (minor) HA-1, mRNA (cDNA clone IMAGE:5273411), partial cds PA
AK128097.1 Homo sapiens cDNA FLJ46218 fis, clone TESTI4013474, highly similar to Homo sapiens minor histocompatibility antigen HA-1 (HA-1), mRNA P
AK122776.1 Homo sapiens cDNA FLJ16319 fis, clone SPLEN2036076, highly similar to Homo sapiens minor histocompatibility antigen HA-1 (HA-1), mRNA P
BC065223.1 Homo sapiens histocompatibility (minor) HA-1, mRNA (cDNA clone MGC:75327 IMAGE:5751491), complete cds PA
NM_012292.3 Homo sapiens histocompatibility (minor) HA-1 (HMHA1), transcript variant 1, mRNA PA
AK300341.1 Homo sapiens cDNA FLJ58624 complete cds, highly similar to Homo sapiens minor histocompatibility antigen HA-1 (HA-1), mRNA P
D86976.1 Homo sapiens mRNA for KIAA0223 gene, partial cds P
AK304271.1 Homo sapiens cDNA FLJ61711 complete cds, highly similar to Homo sapiens minor histocompatibility antigen HA-1 (HA-1), mRNA P
BC035564.1 Homo sapiens histocompatibility (minor) HA-1, mRNA (cDNA clone IMAGE:5139641), partial cds PA
NM_001258328.1 Homo sapiens histocompatibility (minor) HA-1 (HMHA1), transcript variant 2, mRNA PA
NR_047652.1 Homo sapiens histocompatibility (minor) HA-1 (HMHA1), transcript variant 3, non-coding RNA PA

EST sequences (10 of 372) [Show all sequences]

AI004920.1 Clone IMAGE:1632154 mammary gland 3' read A
AI122841.1 Clone IMAGE:1694968 uterus 3' read PA
AI141019.1 Clone IMAGE:1671042 uncharacterized tissue 3' read A
AI214548.1 Clone IMAGE:1883142 lung 3' read A
AI216180.1 Clone IMAGE:1884436 lung 3' read A
AI270222.1 Clone IMAGE:1978648 stomach 3' read A
CB153538.1 Clone B1T694954-29-F10 brain 5' read P
CB155894.1 Clone B2N807043-12-G10 brain 5' read
CB147824.1 Clone L11SNU354s1-17-B03 liver 5' read P
AI357029.1 Clone IMAGE:2002050 lymph node 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help