NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:137002     UniGene Hs.42853     Homo sapiens (human)   ATF6B
Activating transcription factor 6 beta (ATF6B)

Human protein-coding gene ATF6B. Represented by 218 ESTs from 137 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 137002 - Hs.42853]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_004372.3 ATF6B gene product H. sapiens 100.0 702
NP_059102.2 cyclic AMP-dependent transcription factor ATF-6 beta M. musculus 91.5 705
NP_001071188.1 atf6b gene product D. rerio 51.5 379
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_001151201.2 PREDICTED: cyclic AMP-dependent transcription factor ATF-6 beta P. troglodytes 99.2 710
XP_003897439.1 PREDICTED: cyclic AMP-dependent transcription factor ATF-6 beta P. anubis 97.9 710

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; thyroid; placenta; brain; testis; uterus; pancreas; embryonic tissue; mouth; mammary gland; nerve; lung; kidney; blood; skin; prostate; mixed; intestine; eye; esophagus; ovary; umbilical cord; larynx; parathyroid; adrenal gland; cervix; tonsil; liver; stomach; bladder; bone; pineal gland; spleen; heart; lymph node; muscle; amniotic fluid; lymph
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: Chr 6 RH46843 [Map Viewer]
UniSTS entry: Chr 6 STS-N24775 [Map Viewer]
UniSTS entry: Chr 6 MARC_2920-2921:991933729:7
UniSTS entry: Chr 6 STS-X98054
UniSTS entry: Chr 6 MARC2535-2536
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 1 D8S2278
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BT007042.1 Homo sapiens cAMP responsive element binding protein-like 1 mRNA, complete cds P
NM_004381.4 Homo sapiens activating transcription factor 6 beta (ATF6B), transcript variant 1, mRNA PA
AK000928.1 Homo sapiens cDNA FLJ10066 fis, clone HEMBA1001510 P
BC077075.1 Homo sapiens activating transcription factor 6 beta, mRNA (cDNA clone MGC:87823 IMAGE:5766821), complete cds PA
U31903.1 Human CREB-RP (creb-rp) mRNA, complete cds P
BC008394.1 Homo sapiens activating transcription factor 6 beta, mRNA (cDNA clone IMAGE:4296455), complete cds PA
X98054.1 H.sapiens mRNA for G13 protein PA
NM_001136153.1 Homo sapiens activating transcription factor 6 beta (ATF6B), transcript variant 2, mRNA PA

EST sequences (10 of 218) [Show all sequences]

AA994112.1 Clone IMAGE:1630792 mammary gland 3' read A
AA921976.1 Clone IMAGE:1535861 kidney 3' read A
AI027056.1 Clone IMAGE:1649500 parathyroid 3' read A
AI032169.1 Clone IMAGE:1635470 kidney 3' read
AI066460.1 Clone IMAGE:1679264 skin 3' read A
AI074636.1 Clone IMAGE:1662687 mixed 3' read A
AI074964.1 Clone IMAGE:1667137 skin 3' read A
CB053271.1 Clone IMAGE:3290876 uncharacterized tissue 3' read A
CB053272.1 Clone IMAGE:3290876 uncharacterized tissue 5' read P
AI192824.1 Clone IMAGE:1743640 lung 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help