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UGID:226301     UniGene Hs.428209     Homo sapiens (human)   C9orf84
Chromosome 9 open reading frame 84 (C9orf84)

Human protein-coding gene C9orf84. Represented by 47 ESTs from 22 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 226301 - Hs.428209]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_775792.3 C9orf84 gene product H. sapiens 100.0 1443
XP_001475290.2 PREDICTED: uncharacterized protein C9orf84 M. musculus 61.1 1415
XP_001342436.4 PREDICTED: uncharacterized protein C9orf84-like D. rerio 45.9 183
Other hits (2 of 10) [Show all]SpeciesId(%)Len(aa)
XP_001148684.1 PREDICTED: uncharacterized protein C9orf84 homolog isoform 1 P. troglodytes 98.8 1443
XP_001105269.1 PREDICTED: uncharacterized protein C9orf84-like isoform 2 M. mulatta 95.6 1443

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; mammary gland; mouth; mixed; kidney; thymus; trachea; connective tissue; stomach; embryonic tissue; muscle; pancreas; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q31.3
UniSTS entry: Chr 1 GDB:434012
UniSTS entry: Chr 1 D11S2921
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

NM_173521.3 Homo sapiens chromosome 9 open reading frame 84 (C9orf84), transcript variant 1, mRNA PA
BC041858.1 Homo sapiens chromosome 9 open reading frame 84, mRNA (cDNA clone IMAGE:5270761), containing frame-shift errors PA
AK126055.1 Homo sapiens cDNA FLJ44067 fis, clone TESTI4037066 P
BC112357.1 Homo sapiens chromosome 9 open reading frame 84, mRNA (cDNA clone IMAGE:40033702), complete cds P
NM_001080551.1 Homo sapiens chromosome 9 open reading frame 84 (C9orf84), transcript variant 2, mRNA PA
AK057341.1 Homo sapiens cDNA FLJ32779 fis, clone TESTI2002090 P
AK098037.1 Homo sapiens cDNA FLJ40718 fis, clone THYMU2028368 P
AL833535.1 Homo sapiens mRNA; cDNA DKFZp686O0437 (from clone DKFZp686O0437) PA
BC144680.1 Homo sapiens cDNA clone IMAGE:9053214 P

EST sequences (10 of 47) [Show all sequences]

CB046438.1 Clone IMAGE:3252583 kidney 3' read PA
CB046439.1 Clone IMAGE:3252583 kidney 5' read P
BX108004.1 Clone IMAGp998M171827_;_IMAGE:743992 testis P
AW864646.1 stomach
AW864667.1 stomach
CN272219.1 embryonic tissue 5' read
BE041500.1 Clone IMAGE:3041026 mixed 3' read A
BE158610.1 mouth
DR007965.1 Clone MGC5.4.1.1.1.F12 mixed P
DR007966.1 Clone MGC5.4.1.1.1.F12 mixed P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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