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UGID:218430     UniGene Hs.404137     Homo sapiens (human)   KATNAL2
Katanin p60 subunit A-like 2 (KATNAL2)

Human protein-coding gene KATNAL2. Represented by 70 ESTs from 28 cDNA libraries. Corresponds to reference sequence NM_031303.2. [UniGene 218430 - Hs.404137]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_112593.2 KATNAL2 gene product H. sapiens 100.0 465
XP_001148241.2 PREDICTED: katanin p60 subunit A-like 2 isoform 2 P. troglodytes 99.6 465
NP_081997.1 Katnal2 gene product M. musculus 89.2 408
NP_001032491.1 katnal2 gene product D. rerio 75.0 448
XP_001698289.1 katanin p60 catalytic subunit C. reinhardtii 73.5 294
NP_001089782.1 katanin p60 ATPase-containing subunit A-like 2 X. laevis 73.3 504
NP_565791.1 P-loop containing nucleoside triphosphate hydrolase-like protein A. thaliana 64.1 354
NP_524997.2 katanin 60, isoform A D. melanogaster 56.0 298
XP_958048.1 vacuolar protein sorting-associated protein VPS4 N. crassa 53.2 250
NP_490816.4 Protein VPS-4 C. elegans 50.8 240
NP_015499.1 AAA family ATPase VPS4 S. cerevisiae 50.2 245
Other hits (2 of 64) [Show all]SpeciesId(%)Len(aa)
XP_001085922.2 PREDICTED: katanin p60 subunit A-like 2 M. mulatta 97.7 518
XP_003914401.1 PREDICTED: katanin p60 ATPase-containing subunit A-like 2 P. anubis 97.2 465

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; embryonic tissue; mixed; uncharacterized tissue; lung; placenta; kidney; lymph node; thyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 18
Map position: 18q21.1
UniSTS entry: Chr 18 RH103411
UniSTS entry: Chr 18 SHGC-57953
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_031303.2 Homo sapiens katanin p60 subunit A-like 2 (KATNAL2), mRNA PA
AL512748.1 Homo sapiens mRNA; cDNA DKFZp667C165 (from clone DKFZp667C165) A
AK309134.1 Homo sapiens cDNA, FLJ99175
BC034999.2 Homo sapiens katanin p60 subunit A-like 2, mRNA (cDNA clone MGC:33211 IMAGE:4829800), complete cds PA

EST sequences (10 of 70) [Show all sequences]

AI041087.1 Clone IMAGE:1641085 testis 3' read
BX101788.1 Clone IMAGp998O205972_;_IMAGE:2404075 kidney A
BX107417.1 Clone IMAGp998C12373_;_IMAGE:195779 mixed
AA769938.1 Clone 1321088 testis 3' read
BX279804.1 Clone IMAGp998O1710749_;_IMAGE:4829800 testis
BX282587.1 Clone IMAGp998B218679_;_IMAGE:3564596 brain P
AI862682.1 Clone IMAGE:2404075 kidney 3' read A
BX350953.2 Clone CS0DC008YG02 uncharacterized tissue 3' read P
BX375101.2 Clone CS0DC008YG02 uncharacterized tissue 5' read P
CD644122.1 Clone IMAGE:30424453 embryonic tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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