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UGID:207642     UniGene Hs.389107     Homo sapiens (human)   ATP6V0C
ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (ATP6V0C)

Human protein-coding gene ATP6V0C. Represented by 938 ESTs from 303 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 207642 - Hs.389107]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_510748.3 PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit isoform 2 P. troglodytes 100.0 154
NP_001185498.1 ATP6V0C gene product H. sapiens 100.0 154
NP_001082675.1 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c X. laevis 96.1 153
NP_033859.1 V-type proton ATPase 16 kDa proteolipid subunit M. musculus 95.5 154
NP_991117.1 atp6v0cb gene product D. rerio 95.4 151
NP_729706.1 vacuolar H[+] ATPase subunit 16-3, isoform A D. melanogaster 84.6 155
NP_010887.3 Vma3p S. cerevisiae 78.1 155
XP_961418.2 vacuolar ATP synthase 16 kDa proteolipid subunit N. crassa 78.1 155
NP_500188.1 Protein VHA-3 C. elegans 71.5 157
XP_001696361.1 vacuolar H(+)-ATPase V0 sector, c/c' subunits C. reinhardtii 68.7 165
NP_564098.2 ATPase, F0/V0 complex, subunit C protein A. thaliana 64.6 164
Other hits (2 of 63) [Show all]SpeciesId(%)Len(aa)
XP_003916441.1 PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit isoform 1 P. anubis 98.7 154
XP_001915231.1 PREDICTED: v-type proton ATPase 16 kDa proteolipid subunit-like E. caballus 98.7 154

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; skin; pancreas; eye; lung; mixed; uncharacterized tissue; prostate; stomach; placenta; intestine; ovary; uterus; mammary gland; embryonic tissue; blood; kidney; testis; lymph node; ascites; bladder; tonsil; ganglia; bone; connective tissue; muscle; liver; pineal gland; mouth; nerve; adrenal gland; lymph; heart; esophagus; cervix; bone marrow; pituitary gland; salivary gland; ear; spleen; umbilical cord; pharynx; vascular; parathyroid; epididymis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16p13.3
UniSTS entry: Chr 16 RH66735 [Map Viewer]
UniSTS entry: RH69157
UniSTS entry: Chr 16 D16S3305 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BT007155.1 Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c mRNA, complete cds P
NM_001694.3 Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (ATP6V0C), transcript variant 1, mRNA PA
CR541951.1 Homo sapiens full open reading frame cDNA clone RZPDo834E0134D for gene ATP6V0C, ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c; complete cds, without stopcodon P
CR541930.1 Homo sapiens full open reading frame cDNA clone RZPDo834B0334D for gene ATP6V0C, ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c; complete cds, incl. stopcodon P
M62762.1 Human vacuolar H+ ATPase proton channel subunit mRNA, complete cds P
BC004537.2 Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:3723 IMAGE:3618755), complete cds PA
BC007759.2 Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:12873 IMAGE:4127653), complete cds PA
BC007389.2 Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:16271 IMAGE:3831016), complete cds PA
BC009290.2 Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:16615 IMAGE:4111426), complete cds PA
NM_001198569.1 Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (ATP6V0C), transcript variant 2, mRNA PA

EST sequences (10 of 938) [Show all sequences]

AA961353.1 Clone IMAGE:1599486 uncharacterized tissue 3' read A
AA906252.1 Clone IMAGE:1505909 mixed 3' read A
AA907733.1 Clone IMAGE:1505909 mixed 3' read
AA969479.1 Clone IMAGE:1572622 kidney 3' read
AA973141.1 Clone IMAGE:1564211 mixed 3' read A
AA988367.1 Clone IMAGE:1605571 kidney 3' read A
AA993430.1 Clone IMAGE:1624631 embryonic tissue 3' read
AA994258.1 Clone IMAGE:1625377 mixed 3' read A
AA996121.1 Clone IMAGE:1635909 kidney 3' read
AA999815.1 Clone IMAGE:1607987 mammary gland 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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