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UGID:204202     UniGene Hs.381214     Homo sapiens (human)   SPATC1L
Spermatogenesis and centriole associated 1-like (SPATC1L)

Human protein-coding gene SPATC1L. Represented by 192 ESTs from 98 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 204202 - Hs.381214]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001136326.1 SPATC1L gene product H. sapiens 100.0 339
NP_083937.1 Spatc1l gene product M. musculus 89.8 341
Other hits (2 of 12) [Show all]SpeciesId(%)Len(aa)
XP_001098710.1 PREDICTED: uncharacterized protein C21orf56-like isoform 1 M. mulatta 98.2 339
XP_001145501.1 PREDICTED: uncharacterized protein C21orf56-like isoform 1 P. troglodytes 97.9 339

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; testis; brain; prostate; ovary; placenta; eye; intestine; liver; stomach; lung; uterus; lymph node; uncharacterized tissue; lymph; kidney; mammary gland; embryonic tissue; skin; pancreas; muscle; bone; bone marrow; cervix; heart; thymus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 21
Map position: 21q22.3
UniSTS entry: Chr 12 RH91346
UniSTS entry: Chr 7 COL1A2
UniSTS entry: Chr 12 RH98593
UniSTS entry: Chr 7 D7S2763 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

BC065570.1 Homo sapiens chromosome 21 open reading frame 56, mRNA (cDNA clone MGC:74537 IMAGE:6171749), complete cds PA
CR533451.1 Homo sapiens full open reading frame cDNA clone RZPDo834A0117D for gene C21orf56, chromosome 21 open reading frame 56; complete cds, incl. stopcodon P
BC084577.1 Homo sapiens chromosome 21 open reading frame 56, mRNA (cDNA clone MGC:99490 IMAGE:6646538), complete cds PA
BC093804.1 Homo sapiens chromosome 21 open reading frame 56, mRNA (cDNA clone MGC:120839 IMAGE:7939649), complete cds P
BC112293.1 Homo sapiens chromosome 21 open reading frame 56, mRNA (cDNA clone MGC:138498 IMAGE:8327761), complete cds P
AL136871.1 Homo sapiens mRNA; cDNA DKFZp434N0650 (from clone DKFZp434N0650) PA
NM_032261.4 Homo sapiens spermatogenesis and centriole associated 1-like (SPATC1L), transcript variant 2, mRNA PA
BC009497.2 Homo sapiens chromosome 21 open reading frame 56, mRNA (cDNA clone MGC:16456 IMAGE:3949357), complete cds PA
AK309847.1 Homo sapiens cDNA, FLJ99888 P
AK304535.1 Homo sapiens cDNA FLJ61082 complete cds PA
NM_001142854.1 Homo sapiens spermatogenesis and centriole associated 1-like (SPATC1L), transcript variant 1, mRNA PA

EST sequences (10 of 192) [Show all sequences]

AA983841.1 Clone IMAGE:1581436 mixed 3' read A
AA989278.1 Clone IMAGE:1604029 lung 3' read A
AA989425.1 Clone IMAGE:1606206 kidney 3' read A
AA927157.1 Clone IMAGE:1541603 mixed 3' read A
AI004801.1 Clone IMAGE:1626117 mixed 3' read A
AA948107.1 Clone IMAGE:1560176 intestine 3' read A
AI051273.1 Clone IMAGE:1669205 brain 3' read A
AI076110.1 Clone IMAGE:1673281 mixed 3' read A
AI147599.1 Clone IMAGE:1696949 uterus 3' read A
AI193071.1 Clone IMAGE:1743808 lung 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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