NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:203564     UniGene Hs.380138     Homo sapiens (human)   CHN1
Chimerin 1 (CHN1)

Human protein-coding gene CHN1. Represented by 1361 ESTs from 185 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 203564 - Hs.380138]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001813.1 CHN1 gene product H. sapiens 100.0 458
XP_001495900.3 PREDICTED: n-chimaerin E. caballus 99.7 333
NP_001106717.2 Chn1 gene product M. musculus 97.8 458
NP_001080335.1 chimerin 1 X. laevis 94.5 458
NP_998165.1 chn1 gene product D. rerio 91.7 458
NP_727007.1 RhoGAP5A, isoform A D. melanogaster 52.8 282
NP_497323.3 Protein CHIN-1 C. elegans 48.1 158
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_002712345.1 PREDICTED: chimerin (chimaerin) 1 O. cuniculus 99.4 333
XP_003907683.1 PREDICTED: N-chimaerin P. anubis 99.4 479

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; uncharacterized tissue; lung; embryonic tissue; testis; skin; placenta; mixed; heart; blood; uterus; pharynx; eye; intestine; liver; spleen; connective tissue; muscle; pancreas; adrenal gland; bone; lymph node; pituitary gland; trachea; stomach; salivary gland; nerve; ovary; prostate; esophagus; thyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q31.1
UniSTS entry: Chr 2 RH70825 [Map Viewer]
UniSTS entry: Chr 2 RH12769
UniSTS entry: Chr 2 WI-15872 [Map Viewer]
UniSTS entry: Chr 2 WI-19142 [Map Viewer]
UniSTS entry: Chr 2 SHGC-12689 [Map Viewer]
UniSTS entry: Chr 15 Rnu2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

NM_001822.5 Homo sapiens chimerin 1 (CHN1), transcript variant 1, mRNA P
CR456864.1 Homo sapiens full open reading frame cDNA clone RZPDo834H0618D for gene CHN1, chimerin (chimaerin) 1; complete cds, incl. stopcodon P
AB209788.1 Homo sapiens mRNA for chimerin (chimaerin) 1 variant protein P
NM_001025201.3 Homo sapiens chimerin 1 (CHN1), transcript variant 2, mRNA P
BC011393.1 Homo sapiens chimerin (chimaerin) 1, mRNA (cDNA clone MGC:9243 IMAGE:3871858), complete cds PA
AK055060.1 Homo sapiens cDNA FLJ30498 fis, clone BRAWH2000417, highly similar to N-CHIMAERIN P
AK289941.1 Homo sapiens cDNA FLJ76755 complete cds, highly similar to Homo sapiens chimerin (chimaerin) 1 (CHN1), mRNA PA
Z22641.1 H.sapiens a2-chimaerin mRNA P
AK300890.1 Homo sapiens cDNA FLJ58170 complete cds, highly similar to N-chimaerin P
X51408.1 Human mRNA for n-chimaerin P
NM_001206602.1 Homo sapiens chimerin 1 (CHN1), transcript variant 3, mRNA P
NR_038133.1 Homo sapiens chimerin 1 (CHN1), transcript variant 4, non-coding RNA P

EST sequences (10 of 1361) [Show all sequences]

R18438.1 Clone IMAGE:31165 brain 5' read P
R20245.1 Clone IMAGE:32888 brain 5' read P
AI204913.1 Clone IMAGE:1684757 brain 3' read A
AI267699.1 Clone IMAGE:2038494 brain
CB143527.1 Clone L16HLK3-21-D11 liver 5' read P
CB146349.1 Clone L16HLK3-26-G05 liver 5' read P
CB158256.1 Clone L18POOL1n1-9-H07 liver 5' read A
CB117552.1 Clone B1T694954-6-B11 brain 5' read P
CB121711.1 Clone B1T694954-12-D12 brain 5' read P
CB117981.1 Clone B1T694954-8-B08 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help