NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy

Query Tips
Build Info
Library Browser
Download UniGene

Related Databases

NIH cDNA Projects
Finding cDNAs

UGID:203564     UniGene Hs.380138     Homo sapiens (human)   CHN1
Chimerin 1 (CHN1)

Human protein-coding gene CHN1. Represented by 1361 ESTs from 185 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 203564 - Hs.380138]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001813.1 CHN1 gene product H. sapiens 100.0 458
XP_001495900.3 PREDICTED: n-chimaerin E. caballus 99.7 333
NP_001106717.2 Chn1 gene product M. musculus 97.8 458
NP_001080335.1 chimerin 1 X. laevis 94.5 458
NP_998165.1 chn1 gene product D. rerio 91.7 458
NP_727007.1 RhoGAP5A, isoform A D. melanogaster 52.8 282
NP_497323.3 Protein CHIN-1 C. elegans 48.1 158
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_002712345.1 PREDICTED: chimerin (chimaerin) 1 O. cuniculus 99.4 333
XP_003907683.1 PREDICTED: N-chimaerin P. anubis 99.4 479

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; uncharacterized tissue; lung; embryonic tissue; testis; skin; placenta; mixed; heart; blood; uterus; pharynx; eye; intestine; liver; spleen; connective tissue; muscle; pancreas; adrenal gland; bone; lymph node; pituitary gland; trachea; stomach; salivary gland; nerve; ovary; prostate; esophagus; thyroid
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q31.1
UniSTS entry: Chr 2 RH70825 [Map Viewer]
UniSTS entry: Chr 2 RH12769
UniSTS entry: Chr 2 WI-15872 [Map Viewer]
UniSTS entry: Chr 2 WI-19142 [Map Viewer]
UniSTS entry: Chr 2 SHGC-12689 [Map Viewer]
UniSTS entry: Chr 15 Rnu2
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

NM_001822.5 Homo sapiens chimerin 1 (CHN1), transcript variant 1, mRNA P
CR456864.1 Homo sapiens full open reading frame cDNA clone RZPDo834H0618D for gene CHN1, chimerin (chimaerin) 1; complete cds, incl. stopcodon P
AB209788.1 Homo sapiens mRNA for chimerin (chimaerin) 1 variant protein P
NM_001025201.3 Homo sapiens chimerin 1 (CHN1), transcript variant 2, mRNA P
BC011393.1 Homo sapiens chimerin (chimaerin) 1, mRNA (cDNA clone MGC:9243 IMAGE:3871858), complete cds PA
AK055060.1 Homo sapiens cDNA FLJ30498 fis, clone BRAWH2000417, highly similar to N-CHIMAERIN P
AK289941.1 Homo sapiens cDNA FLJ76755 complete cds, highly similar to Homo sapiens chimerin (chimaerin) 1 (CHN1), mRNA PA
Z22641.1 H.sapiens a2-chimaerin mRNA P
AK300890.1 Homo sapiens cDNA FLJ58170 complete cds, highly similar to N-chimaerin P
X51408.1 Human mRNA for n-chimaerin P
NM_001206602.1 Homo sapiens chimerin 1 (CHN1), transcript variant 3, mRNA P
NR_038133.1 Homo sapiens chimerin 1 (CHN1), transcript variant 4, non-coding RNA P

EST sequences (10 of 1361) [Show all sequences]

R18438.1 Clone IMAGE:31165 brain 5' read P
R20245.1 Clone IMAGE:32888 brain 5' read P
AI204913.1 Clone IMAGE:1684757 brain 3' read A
AI267699.1 Clone IMAGE:2038494 brain
CB143527.1 Clone L16HLK3-21-D11 liver 5' read P
CB146349.1 Clone L16HLK3-26-G05 liver 5' read P
CB158256.1 Clone L18POOL1n1-9-H07 liver 5' read A
CB117552.1 Clone B1T694954-6-B11 brain 5' read P
CB121711.1 Clone B1T694954-12-D12 brain 5' read P
CB117981.1 Clone B1T694954-8-B08 brain 5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help