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UGID:136520     UniGene Hs.37288     Homo sapiens (human)   NR1D2
Nuclear receptor subfamily 1, group D, member 2 (NR1D2)

Human protein-coding gene NR1D2. Represented by 229 ESTs from 126 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 136520 - Hs.37288]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_005117.3 NR1D2 gene product H. sapiens 100.0 578
XP_003895222.1 PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1 P. anubis 99.8 578
XP_001089921.2 PREDICTED: nuclear receptor subfamily 1 group D member 2 M. mulatta 99.8 517
XP_516330.2 PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2 P. troglodytes 99.7 578
NP_035714.3 Nr1d2 gene product M. musculus 95.7 575
NP_571140.1 nr1d2b gene product D. rerio 77.3 572
NP_001085940.1 nuclear receptor subfamily 1, group D, member 1 X. laevis 71.0 508
NP_001021667.1 Protein NHR-85, isoform a C. elegans 58.0 188
NP_524195.2 Ecdysone-induced protein 78C, isoform A D. melanogaster 46.7 165
Other hits (2 of 25) [Show all]SpeciesId(%)Len(aa)
XP_001492528.3 PREDICTED: nuclear receptor subfamily 1 group D member 2 E. caballus 99.2 502
XP_542763.2 PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1 C. lupus familiaris 99.1 575

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; placenta; uncharacterized tissue; liver; uterus; mixed; lung; testis; pancreas; ovary; bladder; intestine; pineal gland; thyroid; skin; thymus; bone; prostate; adrenal gland; nerve; heart; embryonic tissue; kidney; adipose tissue; blood; muscle; connective tissue; ganglia; lymph node; ear
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3p24.2
UniSTS entry: Chr 3 SHGC-76776 [Map Viewer]
UniSTS entry: Chr 3 SGC34561 [Map Viewer]
UniSTS entry: Chr 3 RH47404
UniSTS entry: Chr 3 D3S3941 [Map Viewer]
UniSTS entry: Chr 3 STS-L31785 [Map Viewer]
UniSTS entry: Nr1d2
UniSTS entry: Chr 3 NR1D2_2031
UniSTS entry: Chr 1 L17809
UniSTS entry: Chr 1 L17877
UniSTS entry: Chr 1 L17705
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

BC045613.1 Homo sapiens nuclear receptor subfamily 1, group D, member 2, mRNA (cDNA clone MGC:33914 IMAGE:5274113), complete cds PA
BX537786.1 Homo sapiens mRNA; cDNA DKFZp779H1259 (from clone DKFZp779H1259) A
BC070035.1 Homo sapiens nuclear receptor subfamily 1, group D, member 2, mRNA (cDNA clone MGC:87005 IMAGE:4373827), complete cds PA
CR457434.1 Homo sapiens full open reading frame cDNA clone RZPDo834C066D for gene NR1D2, nuclear receptor subfamily 1, group D, member 2; complete cds, incl. stopcodon P
AB209091.1 Homo sapiens premature mRNA for orphan nuclear receptor NR1D2 variant P
BC015929.1 Homo sapiens nuclear receptor subfamily 1, group D, member 2, mRNA (cDNA clone IMAGE:3912370), partial cds A
L31785.1 Homo sapiens orphan nuclear hormone receptor BD73 mRNA, 3' end P
AK313464.1 Homo sapiens cDNA, FLJ94009, Homo sapiens nuclear receptor subfamily 1, group D, member 2(NR1D2), mRNA P
AK301925.1 Homo sapiens cDNA FLJ51368 complete cds, highly similar to Orphan nuclear receptor NR1D2 PA
AK293273.1 Homo sapiens cDNA FLJ52620 complete cds, highly similar to Orphan nuclear receptor NR1D2 P
AB307693.1 Homo sapiens NR1D2 mRNA for nuclear receptor subfamily 1, group D, member 2, complete cds P
NM_001145425.1 Homo sapiens nuclear receptor subfamily 1, group D, member 2 (NR1D2), transcript variant 2, mRNA PA
HQ692831.1 Homo sapiens nuclear receptor Rev-ErbA beta variant 2 (NR1D2) mRNA, complete cds P
HQ692830.1 Homo sapiens nuclear receptor Rev-ErbA beta variant 1 (NR1D2) mRNA, complete cds P
NM_005126.4 Homo sapiens nuclear receptor subfamily 1, group D, member 2 (NR1D2), transcript variant 1, mRNA PA
D16815.1 Homo sapiens mRNA for EAR-1r, complete cds P

EST sequences (10 of 229) [Show all sequences]

AI018688.1 Clone IMAGE:1641940 testis 3' read
AI093344.1 Clone IMAGE:1695106 uterus 3' read A
AA948097.1 Clone IMAGE:1508601 mixed 3' read A
AI123056.1 Clone IMAGE:1509981 mixed 3' read A
BX113865.1 Clone IMAGp998E045651_;_IMAGE:2281707 uterus A
AI249324.1 Clone IMAGE:2004568 pancreas 3' read A
AI203672.1 Clone IMAGE:1753308 testis 3' read
AI271517.1 Clone IMAGE:1857966 mixed 3' read
CB119016.1 Clone L8SCK0-17-D12 liver 5' read P
AI289033.1 Clone IMAGE:1879788 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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