NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy

Query Tips
Build Info
Library Browser
Download UniGene

Related Databases

NIH cDNA Projects
Finding cDNAs

UGID:192084     UniGene Hs.339278     Homo sapiens (human)   COPB1
Coatomer protein complex, subunit beta 1 (COPB1)

Human protein-coding gene COPB1. Represented by 1169 ESTs from 367 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 192084 - Hs.339278]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_002808121.1 PREDICTED: LOW QUALITY PROTEIN: coatomer subunit beta-like M. mulatta 100.0 952
XP_003910236.1 PREDICTED: coatomer subunit beta isoform 1 P. anubis 100.0 952
XP_001172089.1 PREDICTED: coatomer subunit beta isoform 5 P. troglodytes 100.0 952
NP_001137533.1 COPB1 gene product H. sapiens 100.0 952
XP_534069.3 PREDICTED: coatomer subunit beta C. lupus familiaris 99.9 952
NP_001071475.1 COPB1 gene product B. taurus 99.9 952
XP_004016182.1 PREDICTED: coatomer subunit beta O. aries 99.9 952
NP_203534.1 Copb1 gene product M. musculus 99.8 952
XP_001504991.1 PREDICTED: coatomer subunit beta isoform 2 E. caballus 99.8 952
XP_002708871.1 PREDICTED: coatomer protein complex, subunit beta 1 O. cuniculus 99.8 952
NP_542959.1 Copb1 gene product R. norvegicus 99.7 952
NP_001165837.1 COPB1 gene product S. scrofa 99.7 952
XP_001367107.1 PREDICTED: coatomer subunit beta M. domestica 99.6 952
NP_001002013.1 copb1 gene product D. rerio 97.6 952
NP_001090083.1 uncharacterized protein LOC735158 X. laevis 97.5 952
NP_523400.1 beta-coatomer protein D. melanogaster 78.5 955
NP_494441.1 Protein COPB-1 C. elegans 73.8 958
XP_001701255.1 beta-cop C. reinhardtii 58.5 948
NP_194876.2 coatomer subunit beta-1 A. thaliana 57.3 926
XP_957481.1 coatomer beta subunit N. crassa 56.1 950
NP_010524.3 Sec26p S. cerevisiae 53.6 959
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
XP_003225372.1 PREDICTED: coatomer subunit beta-like A. carolinensis 99.5 952
NP_001006467.1 COPB1 gene product G. gallus 99.1 952

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; embryonic tissue; trachea; mammary gland; mouth; lung; uterus; uncharacterized tissue; thymus; placenta; liver; stomach; kidney; skin; mixed; vascular; bone; blood; connective tissue; pancreas; intestine; adrenal gland; prostate; lymph node; bone marrow; parathyroid; eye; heart; cervix; esophagus; larynx; pharynx; ascites; pituitary gland; spleen; muscle; lymph; ovary; bladder; umbilical cord; thyroid; ganglia; pineal gland
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p15.2
UniSTS entry: Chr 11 A002G21 [Map Viewer]
UniSTS entry: Chr 11 HSC1BE082 [Map Viewer]
UniSTS entry: RH47628
UniSTS entry: Chr 1 D8S2278
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

AK001203.1 Homo sapiens cDNA FLJ10341 fis, clone NT2RM2000821, highly similar to COATOMER BETA SUBUNIT P
AL136593.1 Homo sapiens mRNA; cDNA DKFZp761K102 (from clone DKFZp761K102) PA
NM_016451.4 Homo sapiens coatomer protein complex, subunit beta 1 (COPB1), transcript variant 1, mRNA PA
AF084457.1 Homo sapiens beta-cop homolog mRNA, complete cds PA
AK021446.1 Homo sapiens cDNA FLJ11384 fis, clone HEMBA1000519
AF111807.1 Homo sapiens MSTP026 (MST026) mRNA, complete cds PA
BC037280.2 Homo sapiens coatomer protein complex, subunit beta 1, mRNA (cDNA clone MGC:33032 IMAGE:4831366), complete cds PA
BC012572.1 Homo sapiens coatomer protein complex, subunit beta, mRNA (cDNA clone IMAGE:4105407), with apparent retained intron PA
NM_001144062.1 Homo sapiens coatomer protein complex, subunit beta 1 (COPB1), transcript variant 3, mRNA PA
NM_001144061.1 Homo sapiens coatomer protein complex, subunit beta 1 (COPB1), transcript variant 2, mRNA PA
X82103.1 H.sapiens mRNA for beta-COP PA

EST sequences (10 of 1169) [Show all sequences]

AA968701.1 Clone IMAGE:1601120 uncharacterized tissue 3' read A
AA975765.1 Clone IMAGE:1589452 kidney 3' read
AA995683.1 Clone IMAGE:1606384 kidney 3' read A
AA995837.1 Clone IMAGE:1611940 uncharacterized tissue 3' read
AA902809.1 Clone IMAGE:1519152 uncharacterized tissue 3' read A
AI004699.1 Clone IMAGE:1624541 embryonic tissue 3' read A
AI028539.1 Clone IMAGE:1649685 parathyroid 3' read P
AI031819.1 Clone IMAGE:1645963 parathyroid 3' read PA
AI032034.1 Clone IMAGE:1651949 mixed 3' read A
AI050867.1 Clone IMAGE:1668949 brain 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help