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UGID:176336     UniGene Hs.282795     Homo sapiens (human)   A1CF
APOBEC1 complementation factor (A1CF)

Human protein-coding gene A1CF. Represented by 125 ESTs from 33 cDNA libraries. Corresponds to 6 reference sequences (different isoforms). [UniGene 176336 - Hs.282795]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001185748.1 A1CF gene product H. sapiens 100.0 601
XP_001162562.2 PREDICTED: APOBEC1 complementation factor isoform 3 P. troglodytes 99.8 501
NP_001074543.1 APOBEC1 complementation factor M. musculus 95.0 594
NP_001086049.1 APOBEC1 complementation factor X. laevis 85.3 583
XP_685178.1 PREDICTED: APOBEC1 complementation factor isoform 1 D. rerio 84.2 593
NP_732559.1 syncrip, isoform F D. melanogaster 57.8 301
NP_493049.2 Protein HRP-2, isoform a C. elegans 49.7 318
Other hits (2 of 36) [Show all]SpeciesId(%)Len(aa)
XP_001100059.1 PREDICTED: APOBEC1 complementation factor isoform 1 M. mulatta 98.7 591
XP_003903993.1 PREDICTED: APOBEC1 complementation factor isoform 1 P. anubis 98.7 591

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; mixed; pancreas; connective tissue; stomach; intestine; mammary gland; kidney; uncharacterized tissue; muscle; prostate
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q11.23
UniSTS entry: Chr 10 G20794
UniSTS entry: Chr 10 A006G44
UniSTS entry: Chr 10 RH70135
UniSTS entry: Chr 10 RH46928 [Map Viewer]
UniSTS entry: Chr 10 RH103539
UniSTS entry: Chr 10 ACF_9619
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (21)

BC054873.1 Homo sapiens APOBEC1 complementation factor, mRNA (cDNA clone IMAGE:6568205), complete cds PA
AK130022.1 Homo sapiens cDNA FLJ26512 fis, clone KDN07513
AK000324.1 Homo sapiens cDNA FLJ20317 fis, clone HEP08678 PA
NM_014576.3 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 1, mRNA P
CR749831.1 Homo sapiens mRNA; cDNA DKFZp779G2222 (from clone DKFZp779G2222) A
AJ272078.1 Homo sapiens mRNA for APOBEC-1 stimulating protein (ASP gene), isolated from liver P
AJ272079.1 Homo sapiens mRNA for APOBEC-1 stimulating protein (ASP gene), isolated from small intestine P
AF209192.1 Homo sapiens Apobec-1 complementation factor mRNA, complete cds P
AF271789.1 Homo sapiens APOBEC-1 complementation factor mRNA, complete cds P
AF271790.1 Homo sapiens APOBEC-1 complementation factor related protein mRNA, complete cds P
BC130519.1 Homo sapiens APOBEC1 complementation factor, mRNA (cDNA clone MGC:163391 IMAGE:40146550), complete cds P
AK291982.1 Homo sapiens cDNA FLJ77578 complete cds, highly similar to Homo sapiens apobec-1 complementation factor (ACF), transcript variant 1, mRNA P
NM_138933.2 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 3, mRNA P
NM_138932.2 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 2, mRNA P
AK303801.1 Homo sapiens cDNA FLJ61033 complete cds, highly similar to APOBEC1 complementation factor P
BC022263.1 Homo sapiens APOBEC1 complementation factor, mRNA (cDNA clone IMAGE:4714438), with apparent retained intron PA
BC144196.1 Homo sapiens APOBEC1 complementation factor, mRNA (cDNA clone MGC:177733 IMAGE:9052716), complete cds PA
BC144194.1 Homo sapiens cDNA clone IMAGE:9052714, containing frame-shift errors PA
NM_001198820.1 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 6, mRNA P
NM_001198819.1 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 5, mRNA P
NM_001198818.1 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 4, mRNA P

EST sequences (10 of 125) [Show all sequences]

AI022398.1 Clone IMAGE:1652402 mixed 3' read A
AI032955.1 Clone IMAGE:1655583 mixed 3' read A
CB069341.1 Clone IMAGE:6365059 pancreas 3' read
CB069567.1 Clone IMAGE:6365059 pancreas 5' read
BX101891.1 Clone IMAGp998B0988_;_IMAGE:111656 mixed PA
CB163759.1 Clone L17N670205n1-46-C11 liver 5' read P
AI247793.1 Clone IMAGE:1849143 mixed 3' read
AI672811.1 Clone IMAGE:2346725 intestine 3' read PA
AI760643.1 Clone IMAGE:2398319 kidney 3' read P
AI913746.1 Clone IMAGE:2297967 kidney 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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