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UGID:173427     UniGene Hs.272287     Homo sapiens (human)   TRPM5
Transient receptor potential cation channel, subfamily M, member 5 (TRPM5)

Human protein-coding gene TRPM5. Represented by 11 ESTs from 6 cDNA libraries. EST representation biased toward intestine; colorectal tumor. Corresponds to reference sequence NM_014555.3. [UniGene 173427 - Hs.272287]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_055370.1 TRPM5 gene product H. sapiens 100.0 1164
NP_064673.2 Trpm5 gene product M. musculus 84.4 1157
NP_001121711.1 trpm5 gene product D. rerio 59.3 1089
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_521720.4 PREDICTED: transient receptor potential cation channel subfamily M member 5 P. troglodytes 97.3 1098
XP_002799488.1 PREDICTED: transient receptor potential cation channel subfamily M member 5 isoform 2 M. mulatta 95.1 1172

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: intestine [show more like this]
colorectal tumor [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: intestine; mammary gland; mixed; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p15.5
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AJ270996.1 Homo sapiens partial mRNA for LTRPC5 protein (LTRPC5 gene) PA
AF177473.1 Homo sapiens MTR1 (MTR1) mRNA, complete cds, alternatively spliced P
BC093789.1 Homo sapiens transient receptor potential cation channel, subfamily M, member 5, mRNA (cDNA clone MGC:120824 IMAGE:7939634), complete cds P
BC093787.1 Homo sapiens transient receptor potential cation channel, subfamily M, member 5, mRNA (cDNA clone MGC:120822 IMAGE:7939632), complete cds P
NM_014555.3 Homo sapiens transient receptor potential cation channel, subfamily M, member 5 (TRPM5), mRNA PA
BC143353.1 Homo sapiens transient receptor potential cation channel, subfamily M, member 5, mRNA (cDNA clone MGC:176875 IMAGE:9051858), complete cds P
BC143351.1 Homo sapiens transient receptor potential cation channel, subfamily M, member 5, mRNA (cDNA clone MGC:176873 IMAGE:9051856), complete cds P

EST sequences (11)

CV367487.1 intestine
DA647280.1 Clone MAMMA1002878 mammary gland 5' read
DW009697.1 Clone MGC10.3.1.1.1.H06 mixed
BF814861.1 intestine
BF814862.1 intestine
BF814864.1 intestine
BF815505.1 intestine
BF816249.1 intestine
BF899960.1 blood
BG950541.1 intestine
AA577486.1 Clone IMAGE:1075635 intestine 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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