NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:172896     UniGene Hs.269988     Homo sapiens (human)   PTBP3
Polypyrimidine tract binding protein 3 (PTBP3)

Human protein-coding gene PTBP3. Represented by 509 ESTs from 238 cDNA libraries. Corresponds to 6 reference sequences (different isoforms). [UniGene 172896 - Hs.269988]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001149612.1 PREDICTED: polypyrimidine tract-binding protein 3 isoform 5 P. troglodytes 100.0 557
NP_001231827.1 PTBP3 gene product H. sapiens 100.0 557
XP_003911410.1 PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 P. anubis 100.0 554
NP_659153.2 polypyrimidine tract-binding protein 3 isoform 1 M. musculus 96.2 550
XP_001335967.1 PREDICTED: regulator of differentiation 1 D. rerio 86.2 521
NP_001083815.1 polypyrimidine tract binding protein 1 X. laevis 81.3 551
NP_788776.2 hephaestus, isoform G D. melanogaster 57.5 610
NP_741041.1 Protein PTB-1, isoform a C. elegans 54.6 495
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_001490810.2 PREDICTED: regulator of differentiation 1 isoform 1 E. caballus 97.5 522
XP_004004060.1 PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 O. aries 97.3 525

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: intestine; uncharacterized tissue; embryonic tissue; lung; testis; uterus; skin; lymph node; mixed; pancreas; ear; liver; mouth; placenta; brain; mammary gland; blood; pharynx; kidney; thymus; muscle; prostate; ovary; stomach; bone marrow; eye; thyroid; vascular; adrenal gland; trachea; bone; salivary gland; connective tissue; bladder; ascites; nerve; cervix; parathyroid; amniotic fluid; ganglia; pituitary gland; umbilical cord; adipose tissue; larynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q32
UniSTS entry: Chr 9 RH102286
UniSTS entry: Chr 9 WI-18346 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BC044585.1 Homo sapiens ROD1 regulator of differentiation 1 (S. pombe), mRNA (cDNA clone MGC:57192 IMAGE:5295452), complete cds PA
AB023967.1 Homo sapiens mRNA for Rod1, complete cds P
BC045825.1 Homo sapiens cDNA clone IMAGE:5262112 A
NM_005156.6 Homo sapiens polypyrimidine tract binding protein 3 (PTBP3), transcript variant 1, mRNA PA
AK001685.1 Homo sapiens cDNA FLJ10823 fis, clone NT2RP4001080, highly similar to Regulator of differentiation 1 P
CR749471.1 Homo sapiens mRNA; cDNA DKFZp781I1117 (from clone DKFZp781I1117) PA
AK302558.1 Homo sapiens cDNA FLJ51619 complete cds, highly similar to Regulator of differentiation 1 P
NM_001163790.2 Homo sapiens polypyrimidine tract binding protein 3 (PTBP3), transcript variant 3, mRNA PA
NM_001163788.2 Homo sapiens polypyrimidine tract binding protein 3 (PTBP3), transcript variant 2, mRNA PA
NM_001244898.1 Homo sapiens polypyrimidine tract binding protein 3 (PTBP3), transcript variant 6, mRNA PA
NM_001244896.1 Homo sapiens polypyrimidine tract binding protein 3 (PTBP3), transcript variant 4, mRNA PA
NM_001244897.1 Homo sapiens polypyrimidine tract binding protein 3 (PTBP3), transcript variant 5, mRNA PA
BC039896.1 Homo sapiens, Similar to ROD1 regulator of differentiation 1 (S. pombe), clone IMAGE:4521078, mRNA, partial cds PA

EST sequences (10 of 509) [Show all sequences]

AA863366.1 Clone IMAGE:1469258 uncharacterized tissue 3' read
AA968790.1 Clone IMAGE:1593683 kidney 3' read A
AA970956.1 Clone IMAGE:1575240 kidney 3' read
AA989512.1 Clone IMAGE:1606292 kidney 3' read A
AA927668.1 Clone IMAGE:1552684 uncharacterized tissue 3' read
AA947230.1 Clone IMAGE:1560259 intestine 3' read A
AI050963.1 Clone IMAGE:1648707 parathyroid 3' read A
AI078737.1 Clone IMAGE:1659844 embryonic tissue 3' read A
CB047579.1 Clone IMAGE:3253448 kidney 3' read A
CB047580.1 Clone IMAGE:3253448 kidney 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help