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UGID:172631     UniGene Hs.269109     Homo sapiens (human)   SEMA3C
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C)

Human protein-coding gene SEMA3C. Represented by 381 ESTs from 139 cDNA libraries. Corresponds to reference sequence NM_006379.3. [UniGene 172631 - Hs.269109]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001159729.2 PREDICTED: semaphorin-3C isoform 2 P. troglodytes 100.0 768
NP_006370.1 SEMA3C gene product H. sapiens 100.0 750
XP_001108385.1 PREDICTED: semaphorin-3C-like isoform 2 M. mulatta 99.9 750
XP_003896445.1 PREDICTED: semaphorin-3C P. anubis 99.9 750
NP_038685.3 Sema3c gene product M. musculus 98.5 750
NP_001088402.1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C precursor X. laevis 88.0 747
XP_692847.2 PREDICTED: semaphorin-3C D. rerio 78.5 721
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_533139.2 PREDICTED: semaphorin-3C C. lupus familiaris 99.1 749
XP_002712061.1 PREDICTED: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C-like O. cuniculus 98.9 750

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mammary gland; uterus; connective tissue; pancreas; eye; uncharacterized tissue; ear; vascular; embryonic tissue; bladder; trachea; mouth; prostate; lung; esophagus; muscle; mixed; skin; liver; kidney; adrenal gland; intestine; spinal cord; blood; bone; stomach; heart; thyroid; nerve; spleen; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7q21-q31
UniSTS entry: Chr 7 STS-N38844
UniSTS entry: Chr 7 RH48494 [Map Viewer]
UniSTS entry: Chr 7 G31434
UniSTS entry: Chr 7 RH80742
UniSTS entry: Chr 7 SEMA3C_394
UniSTS entry: Chr 1 D11S2560
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

NM_006379.3 Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C), mRNA PA
AK312478.1 Homo sapiens cDNA, FLJ92836, Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C), mRNA P
BC030690.1 Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C, mRNA (cDNA clone MGC:26266 IMAGE:4824598), complete cds PA
AK299322.1 Homo sapiens cDNA FLJ50181 complete cds, highly similar to Semaphorin-3C precursor P
AK304294.1 Homo sapiens cDNA FLJ55486 complete cds, highly similar to Semaphorin-3C precursor P
AF086506.1 Homo sapiens full length insert cDNA clone ZE02E03 A
D32000.1 Homo sapiens mRNA, ovarian cancer
AB000220.1 Homo sapiens mRNA for semaphorin E, complete cds P

EST sequences (10 of 381) [Show all sequences]

AA977698.1 Clone IMAGE:1556018 uncharacterized tissue 3' read A
AI090512.1 Clone IMAGE:1692100 heart 3' read
BX114577.1 Clone IMAGp998H161157_;_IMAGE:486591 uterus
AI261434.1 Clone IMAGE:1868398 kidney 3' read
CB158967.1 Clone L18POOL1n1-32-G11 liver 5' read
CB128336.1 Clone L11SNU354-15-H12 liver 5' read
AI275950.1 Clone IMAGE:1990197 uterus 3' read A
CB131490.1 Clone L13SNU387-7-E06 liver 5' read
CB149108.1 Clone L15CKK1-35-B08 liver 5' read P
AI241943.1 Clone IMAGE:1977280 brain 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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