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UGID:167502     UniGene Hs.236030     Homo sapiens (human)   SMARCC2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 (SMARCC2)

Human protein-coding gene SMARCC2. Represented by 785 ESTs from 314 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 167502 - Hs.236030]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_003066.2 SMARCC2 gene product H. sapiens 100.0 1213
XP_509136.3 PREDICTED: SWI/SNF complex subunit SMARCC2 P. troglodytes 100.0 1018
XP_003906627.1 PREDICTED: SWI/SNF complex subunit SMARCC2 isoform 5 P. anubis 99.9 1150
XP_001097669.2 PREDICTED: SWI/SNF complex subunit SMARCC2-like M. mulatta 99.9 1041
XP_001492059.3 PREDICTED: SWI/SNF complex subunit SMARCC2 E. caballus 99.8 1018
XP_003481667.1 PREDICTED: SWI/SNF complex subunit SMARCC2 S. scrofa 99.6 1210
NP_001165695.1 SWI/SNF complex subunit SMARCC2 B. taurus 99.6 1129
XP_002711218.1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 O. cuniculus 99.5 1118
NP_001107569.1 Smarcc2 gene product M. musculus 98.7 1212
NP_001085396.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 X. laevis 90.2 1107
XP_695864.2 PREDICTED: SWI/SNF complex subunit SMARCC2 D. rerio 89.3 1036
XP_962673.1 hypothetical protein NCU08003 N. crassa 68.3 205
NP_001189230.1 moira, isoform B D. melanogaster 63.2 1138
NP_507906.1 Phasmid Socket Absent family member (psa-1) C. elegans 58.7 668
NP_116695.3 Rsc8p S. cerevisiae 55.2 174
Other hits (2 of 36) [Show all]SpeciesId(%)Len(aa)
XP_004023743.1 PREDICTED: LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2 O. aries 99.3 1115
XP_538228.3 PREDICTED: SWI/SNF complex subunit SMARCC2 C. lupus familiaris 99.1 1018

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; pancreas; uncharacterized tissue; uterus; kidney; intestine; placenta; testis; skin; embryonic tissue; spleen; cervix; blood; eye; thyroid; mammary gland; mixed; liver; ovary; lymph node; thymus; connective tissue; bone; tonsil; mouth; prostate; adrenal gland; trachea; muscle; pharynx; heart; pituitary gland; larynx; lymph; stomach; ascites; salivary gland; ganglia; bladder; bone marrow; epididymis; amniotic fluid; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.2
UniSTS entry: Chr 12 A005R19 [Map Viewer]
UniSTS entry: Chr 12 G32279
UniSTS entry: Chr 12 STS-T64879 [Map Viewer]
UniSTS entry: Chr 12 STS-U66616 [Map Viewer]
UniSTS entry: Chr 12 G64806
UniSTS entry: Chr 12 RH47781
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BT009924.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 mRNA, complete cds P
NM_003075.3 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 (SMARCC2), transcript variant 1, mRNA P
AB209293.1 Homo sapiens mRNA for SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 isoform b variant protein P
AB209006.1 Homo sapiens mRNA for SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 isoform b variant protein P
AK025128.1 Homo sapiens cDNA: FLJ21475 fis, clone COL04948, highly similar to HSU66616 Human SWI/SNF complex 170 KDa subunit (BAF170) mRNA PA
BC009067.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, mRNA (cDNA clone IMAGE:3854442), partial cds PA
BC128599.1 Homo sapiens cDNA clone IMAGE:40132794 P
BC013045.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, mRNA (cDNA clone MGC:17103 IMAGE:4180388), complete cds PA
AK315153.1 Homo sapiens cDNA, FLJ96126 P
BC026222.2 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, mRNA (cDNA clone MGC:21969 IMAGE:4395012), complete cds PA
NM_139067.2 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 (SMARCC2), transcript variant 2, mRNA P
AK293896.1 Homo sapiens cDNA FLJ55615 complete cds, highly similar to SWI/SNF-related matrix-associatedactin-dependent regulator of chromatin subfamily C member 2 P
NM_001130420.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 (SMARCC2), transcript variant 3, mRNA P
U66616.1 Human SWI/SNF complex 170 KDa subunit (BAF170) mRNA, complete cds PA

EST sequences (10 of 785) [Show all sequences]

AA975796.1 Clone IMAGE:1589496 kidney 3' read
AA989325.1 Clone IMAGE:1602435 lung 3' read
AA885840.1 Clone IMAGE:1500361 lung 3' read
AA887390.1 Clone IMAGE:1500462 lung 3' read
AI004541.1 Clone IMAGE:1621485 testis 3' read
AI017576.1 Clone IMAGE:1627151 mixed 3' read P
AI049544.1 Clone IMAGE:1700168 kidney 3' read
AI049824.1 Clone IMAGE:1700867 kidney 3' read
AI052345.1 Clone IMAGE:1676005 mixed 3' read
AI078581.1 Clone IMAGE:1677563 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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