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UGID:167244     UniGene Hs.233240     Homo sapiens (human)   COL6A3
Collagen, type VI, alpha 3 (COL6A3)

Human protein-coding gene COL6A3. Represented by 895 ESTs from 287 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 167244 - Hs.233240]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_004360.2 COL6A3 gene product H. sapiens 100.0 3176
XP_001153544.1 PREDICTED: collagen alpha-3(VI) chain isoform 4 P. troglodytes 99.8 3176
NP_001229937.1 collagen alpha-3(VI) chain isoform 1 precursor M. musculus 87.7 3283
XP_002663415.2 PREDICTED: collagen alpha-3(VI) chain D. rerio 54.2 2818
NP_001081260.1 collagen, type II, alpha 1 precursor X. laevis 47.0 1059
NP_001138062.1 CG42342, isoform C D. melanogaster 45.9 196
NP_001255858.1 Protein COL-135, isoform b C. elegans 45.0 180
Other hits (2 of 39) [Show all]SpeciesId(%)Len(aa)
XP_003908181.1 PREDICTED: collagen alpha-3(VI) chain-like, partial P. anubis 98.6 1201
XP_001084624.1 PREDICTED: collagen alpha-3(VI) chain isoform 5 M. mulatta 98.5 2968

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: bone; embryonic tissue; connective tissue; uncharacterized tissue; placenta; muscle; lung; uterus; mixed; intestine; pancreas; mammary gland; kidney; stomach; amniotic fluid; testis; prostate; ganglia; bladder; skin; brain; thymus; heart; bone marrow; esophagus; thyroid; ovary; mouth; adipose tissue; pharynx; eye; trachea; larynx; ear; nerve; liver; vascular; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q37
UniSTS entry: Chr 2 RH18099
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (20)

BX647500.1 Homo sapiens mRNA; cDNA DKFZp686K04147 (from clone DKFZp686K04147) PA
NM_004369.3 Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 1, mRNA PA
AB209636.1 Homo sapiens mRNA for alpha 3 type VI collagen isoform 5 precursor variant protein P
NM_057167.3 Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 5, mRNA PA
NM_057166.4 Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 4, mRNA PA
NM_057165.4 Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 3, mRNA PA
NM_057164.4 Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 2, mRNA PA
AK308451.1 Homo sapiens cDNA, FLJ98399 P
BC033174.1 Homo sapiens, Similar to collagen, type VI, alpha 3, clone IMAGE:4560529, mRNA, partial cds PA
AK092021.1 Homo sapiens cDNA FLJ34702 fis, clone MESAN2002790, highly similar to Collagen alpha-3(VI) chain precursor P
AK304870.1 Homo sapiens cDNA FLJ61583 complete cds, highly similar to Collagen alpha-3(VI) chain precursor PA
AK303290.1 Homo sapiens cDNA FLJ57023 complete cds, highly similar to Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 3, mRNA P
S49432.1 type VI collagen alpha 3 chain {5' region, alternatively spliced, exon A9/N10} [human, mRNA, 653 nt] P
X06196.1 Human mRNA for collagen alpha 3 (VI) chain 5'region
M27449.1 Human alpha-3 type VI collagen (COL6A3) mRNA, partial cds
BC171790.1 Homo sapiens collagen, type VI, alpha 3, mRNA (cDNA clone MGC:198505 IMAGE:9054444), complete cds P
BC144595.1 Homo sapiens collagen, type VI, alpha 3, mRNA (cDNA clone MGC:178142 IMAGE:9053125), complete cds P
BC150625.1 Homo sapiens collagen, type VI, alpha 3, mRNA (cDNA clone MGC:183535 IMAGE:9056995), complete cds P
X52022.1 H.sapiens RNA for type VI collagen alpha3 chain PA
M20778.1 Homo sapien, alpha-3 (VI) collagen P

EST sequences (10 of 895) [Show all sequences]

AA954132.1 Clone IMAGE:1591277 kidney 3' read
AA977146.1 Clone IMAGE:1587322 uncharacterized tissue 3' read
AA902817.1 Clone IMAGE:1519174 uncharacterized tissue 3' read A
AI077475.1 Clone IMAGE:1678654 mixed 3' read A
AI079298.1 Clone IMAGE:1677444 mixed 3' read A
AI080534.1 Clone IMAGE:1680042 skin 3' read A
AI123095.1 Clone IMAGE:1693526 heart 3' read A
AI125527.1 Clone IMAGE:1737108 testis 3' read A
AI129160.1 Clone IMAGE:1663362 skin 3' read A
AI138205.1 Clone IMAGE:1713395 placenta 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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