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UGID:163668     UniGene Hs.208701     Homo sapiens (human)   C18orf54
Chromosome 18 open reading frame 54 (C18orf54)

Human protein-coding gene C18orf54. Represented by 98 ESTs from 50 cDNA libraries. Corresponds to reference sequence NM_173529.4. [UniGene 163668 - Hs.208701]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_775800.3 C18orf54 gene product H. sapiens 100.0 371
NP_766555.1 4930503L19Rik gene product M. musculus 69.5 525
Other hits (2 of 13) [Show all]SpeciesId(%)Len(aa)
XP_003953335.1 PREDICTED: lung adenoma susceptibility protein 2 P. troglodytes 99.2 532
XP_003914444.1 PREDICTED: lung adenoma susceptibility protein 2 isoform 1 P. anubis 95.1 532

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; embryonic tissue; placenta; eye; lymph node; uterus; uncharacterized tissue; mixed; intestine; prostate; bone marrow; brain; blood; pancreas; liver; lung; muscle; bone; skin
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 18
Map position: 18q21.2
UniSTS entry: Chr 18 RH45188 [Map Viewer]
UniSTS entry: Chr 18 RH80534
UniSTS entry: Chr 18 RH104151
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

NM_173529.4 Homo sapiens chromosome 18 open reading frame 54 (C18orf54), mRNA P
BC043651.2 Homo sapiens chromosome 18 open reading frame 54, mRNA (cDNA clone IMAGE:5278457) A
BX640877.1 Homo sapiens mRNA; cDNA DKFZp686G03170 (from clone DKFZp686G03170) PA
AK126503.1 Homo sapiens cDNA FLJ44539 fis, clone UTERU3005205 P
BC036054.2 Homo sapiens chromosome 18 open reading frame 54, mRNA (cDNA clone MGC:33382 IMAGE:5273569), complete cds PA
AB330144.1 Homo sapiens B9838V3 mRNA for hypothetical protein V3, complete cds P
AB330143.1 Homo sapiens B9838V1 mRNA for hypothetical protein V1, complete cds P
AB353076.1 Homo sapiens B9838V4 mRNA for hypothetical protein V4, complete cds P
AB353077.1 Homo sapiens B9838V5 mRNA for hypothetical protein V5, complete cds P
AB267906.1 Homo sapiens B9838 mRNA for hypothetical protein, complete cds P

EST sequences (10 of 98) [Show all sequences]

AA928068.1 Clone IMAGE:1541631 mixed 3' read
CB044397.1 Clone IMAGE:3217539 intestine 5' read
CB044396.1 Clone IMAGE:3217539 intestine 3' read A
BX108360.1 Clone IMAGp998G24221_;_IMAGE:146351 placenta
BX088973.1 Clone IMAGp998J213476_;_IMAGE:1377140 testis P
BX090828.1 Clone IMAGp998N051831_;_IMAGE:745540 testis A
AI191017.1 Clone IMAGE:1739260 lung 3' read
AI217222.1 Clone IMAGE:1755680 testis 3' read
CB105907.1 Clone L1HLK1-12-E09 liver 5' read
R31640.1 Clone IMAGE:135000 placenta 5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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