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UGID:157515     UniGene Hs.170131     Homo sapiens (human)   NFIC
Nuclear factor I/C (CCAAT-binding transcription factor) (NFIC)

Human protein-coding gene NFIC. Represented by 498 ESTs from 233 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 157515 - Hs.170131]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003914697.1 PREDICTED: nuclear factor 1 C-type isoform 2 P. anubis 100.0 507
NP_001231931.1 NFIC gene product H. sapiens 100.0 507
XP_001117899.2 PREDICTED: nuclear factor 1 C-type M. mulatta 99.8 485
NP_001019745.1 NFIC gene product B. taurus 99.5 427
NP_032714.1 nuclear factor 1 C-type isoform a M. musculus 97.0 438
XP_001921162.1 PREDICTED: nuclear factor 1 C-type D. rerio 90.0 499
NP_001089972.1 nuclear factor I/C (CCAAT-binding transcription factor) X. laevis 87.4 500
NP_995592.2 nuclear factor I, isoform B D. melanogaster 80.7 202
NP_001022507.1 Protein NFI-1, isoform c C. elegans 57.8 237
Other hits (2 of 31) [Show all]SpeciesId(%)Len(aa)
XP_542179.4 PREDICTED: nuclear factor 1 C-type isoform 3 C. lupus familiaris 99.0 505
XP_003480883.1 PREDICTED: nuclear factor 1 C-type-like S. scrofa 98.8 318

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; lung; prostate; testis; thyroid; uterus; mixed; adrenal gland; uncharacterized tissue; pancreas; mammary gland; mouth; lymph node; esophagus; kidney; stomach; skin; vascular; embryonic tissue; trachea; umbilical cord; connective tissue; intestine; liver; placenta; muscle; adipose tissue; ascites; ovary; salivary gland; ganglia; nerve; bone; heart; cervix; blood; spleen; thymus; bladder; tonsil; bone marrow
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.3
UniSTS entry: Chr 19 RH70943
UniSTS entry: Chr 19 WI-12079 [Map Viewer]
UniSTS entry: Chr 19 RH36034
UniSTS entry: Chr 19 RH47688
UniSTS entry: Chr 19 A008X33
UniSTS entry: Chr 19 RH67057
UniSTS entry: Chr 19 G32369
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AK129956.1 Homo sapiens cDNA FLJ26446 fis, clone KDN02743 A
NM_205843.2 Homo sapiens nuclear factor I/C (CCAAT-binding transcription factor) (NFIC), transcript variant 2, mRNA P
CR536507.1 Homo sapiens full open reading frame cDNA clone RZPDo834G1221D for gene NFIC, nuclear factor I/C (CCAAT-binding transcription factor); complete cds, incl. stopcodon P
X92857.1 H.sapiens mRNA for NFI/CAAT-binding transcription factor 5 (CTF5) PA
NM_005597.3 Homo sapiens nuclear factor I/C (CCAAT-binding transcription factor) (NFIC), transcript variant 5, mRNA P
BC012120.1 Homo sapiens nuclear factor I/C (CCAAT-binding transcription factor), mRNA (cDNA clone MGC:20153 IMAGE:4554661), complete cds PA
AK289885.1 Homo sapiens cDNA FLJ75592 complete cds, highly similar to Homo sapiens nuclear factor I/C (CCAAT-binding transcription factor) (NFIC), transcript variant 2, mRNA P
X12492.1 Human mRNA for CAAT-box binding transcription factor CTF-1 (syn. CTF/NFI or CTF or NF-I or NF-1) P
AK304816.1 Homo sapiens cDNA FLJ51687 complete cds, highly similar to Nuclear factor 1 C-type P
AK297867.1 Homo sapiens cDNA FLJ60130 complete cds, highly similar to Nuclear factor 1 C-type P
AK297825.1 Homo sapiens cDNA FLJ58543 complete cds, highly similar to Nuclear factor 1 C-type P
NM_001245004.1 Homo sapiens nuclear factor I/C (CCAAT-binding transcription factor) (NFIC), transcript variant 3, mRNA P
NM_001245002.1 Homo sapiens nuclear factor I/C (CCAAT-binding transcription factor) (NFIC), transcript variant 1, mRNA P
NM_001245005.1 Homo sapiens nuclear factor I/C (CCAAT-binding transcription factor) (NFIC), transcript variant 4, mRNA P

EST sequences (10 of 498) [Show all sequences]

AA988208.1 Clone IMAGE:1603929 lung 3' read
R16370.1 Clone IMAGE:29923 brain 5' read
AI088818.1 Clone IMAGE:1686135 brain 3' read
AI089816.1 Clone IMAGE:1686448 brain 3' read
AI093722.1 Clone IMAGE:1688017 mixed 3' read
AI094574.1 Clone IMAGE:1670581 brain 3' read
AI095217.1 Clone IMAGE:1672454 uncharacterized tissue 3' read
AI124076.1 Clone IMAGE:1694947 uterus 3' read
AI084488.1 Clone IMAGE:1662467 mixed 3' read
CB050406.1 Clone IMAGE:3272008 prostate 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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