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UGID:133401     UniGene Hs.15243     Homo sapiens (human)   IFFO1
Intermediate filament family orphan 1 (IFFO1)

Human protein-coding gene IFFO1. Represented by 199 ESTs from 111 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 133401 - Hs.15243]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003313493.1 PREDICTED: intermediate filament family orphan 1 isoform 1 P. troglodytes 100.0 570
NP_001180386.1 IFFO1 gene product H. sapiens 100.0 570
XP_003905905.1 PREDICTED: intermediate filament family orphan 1 isoform 2 P. anubis 99.7 570
NP_001034758.1 Iffo1 gene product M. musculus 96.6 561
XP_690165.4 PREDICTED: intermediate filament family orphan 1 D. rerio 69.6 592
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_001105401.1 PREDICTED: intermediate filament family orphan 1-like isoform 2 M. mulatta 99.1 565
XP_867927.2 PREDICTED: intermediate filament family orphan 1 isoform 2 C. lupus familiaris 97.7 571

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; skin; uterus; eye; mixed; lung; uncharacterized tissue; placenta; pituitary gland; blood; tonsil; connective tissue; embryonic tissue; liver; testis; amniotic fluid; stomach; pancreas; kidney; thymus; spleen; intestine; lymph; prostate; bone; bone marrow; mammary gland; ganglia; ovary; lymph node; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12p13.3
UniSTS entry: Chr 12 SHGC-64826
UniSTS entry: Chr 12 RH93399
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AL080214.1 Homo sapiens mRNA; cDNA DKFZp586I2223 (from clone DKFZp586I2223) P
BC010431.1 Homo sapiens intermediate filament family orphan 1, mRNA (cDNA clone IMAGE:3508474) PA
BC063004.1 Homo sapiens intermediate filament family orphan 1, mRNA (cDNA clone IMAGE:5212404), complete cds PA
AF124432.1 Homo sapiens HOM-TES-103 tumor antigen mRNA, complete sequence PA
NM_001039670.2 Homo sapiens intermediate filament family orphan 1 (IFFO1), transcript variant 4, mRNA P
BC001790.1 Homo sapiens hypothetical protein LOC25900, isoform 3, mRNA (cDNA clone IMAGE:3501825) PA
BC002857.2 Homo sapiens intermediate filament family orphan 1, mRNA (cDNA clone IMAGE:3636594), partial cds PA
BC004384.1 Homo sapiens intermediate filament family orphan 1, mRNA (cDNA clone IMAGE:3616057), partial cds PA
BC110387.1 Homo sapiens intermediate filament family orphan 1, mRNA (cDNA clone MGC:117359 IMAGE:5183989), complete cds PA
NM_080730.4 Homo sapiens intermediate filament family orphan 1 (IFFO1), transcript variant 2, mRNA P
AK298905.1 Homo sapiens cDNA FLJ55827 complete cds P
NM_001193457.1 Homo sapiens intermediate filament family orphan 1 (IFFO1), transcript variant 5, mRNA P
BC023664.2 Homo sapiens hypothetical protein LOC25900, isoform 3, mRNA (cDNA clone IMAGE:4896463) PA
NR_036467.1 Homo sapiens intermediate filament family orphan 1 (IFFO1), transcript variant 7, non-coding RNA PA

EST sequences (10 of 199) [Show all sequences]

AI015278.1 Clone IMAGE:1641219 testis 3' read
AI096830.1 Clone IMAGE:1698306 uterus 3' read
AI161033.1 Clone IMAGE:1721783 uterus 3' read
BX089461.1 Clone IMAGp998B021156_;_IMAGE:486049 uterus A
AI216022.1 Clone IMAGE:1844271 mixed 3' read
AI201752.1 Clone IMAGE:1944019 prostate 3' read
AI264487.1 Clone IMAGE:1874733 intestine 3' read
CB107040.1 Clone L3SNU475-12-D06 liver 5' read P
CB154430.1 Clone B2N807043-25-F05 brain 5' read P
AI247682.1 Clone IMAGE:1849017 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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