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UGID:152701     UniGene Hs.147635     Homo sapiens (human)   MSR1
Macrophage scavenger receptor 1 (MSR1)

Human protein-coding gene MSR1. Represented by 79 ESTs from 47 cDNA libraries. EST representation biased toward adult. Corresponds to 3 reference sequences (different isoforms). [UniGene 152701 - Hs.147635]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_619729.1 MSR1 gene product H. sapiens 100.0 450
NP_001106797.1 Msr1 gene product M. musculus 73.5 456
NP_001025361.1 scavenger receptor class A member 5 D. rerio 49.5 223
Other hits (2 of 16) [Show all]SpeciesId(%)Len(aa)
XP_001140701.2 PREDICTED: macrophage scavenger receptor types I and II isoform 1 P. troglodytes 98.2 450
XP_001097884.1 PREDICTED: macrophage scavenger receptor types I and II M. mulatta 97.1 416

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: adult [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: adrenal gland; brain; pharynx; connective tissue; lung; blood; larynx; heart; intestine; mammary gland; vascular; placenta; kidney; uncharacterized tissue; pancreas; liver; spleen; trachea; uterus; mixed; testis; bladder
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8p22
UniSTS entry: Chr 8 GDB:580807
UniSTS entry: Chr 8 PMC310830P19
UniSTS entry: Chr 8 PMC310830P18
UniSTS entry: Chr 8 SHGC-12479 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

NM_002445.3 Homo sapiens macrophage scavenger receptor 1 (MSR1), transcript variant SR-AII, mRNA P
BC063878.1 Homo sapiens macrophage scavenger receptor 1, mRNA (cDNA clone MGC:75441 IMAGE:30378951), complete cds PA
NM_138716.2 Homo sapiens macrophage scavenger receptor 1 (MSR1), transcript variant SR-AIII, mRNA P
NM_138715.2 Homo sapiens macrophage scavenger receptor 1 (MSR1), transcript variant SR-AI, mRNA P
AK293217.1 Homo sapiens cDNA FLJ55770 complete cds, highly similar to Macrophage scavenger receptor types I and II P
AK293409.1 Homo sapiens cDNA FLJ53710 complete cds, highly similar to Homo sapiens macrophage scavenger receptor 1 (MSR1), transcript variant SR-AII, mRNA P
D13264.1 Homo sapiens mRNA for macrophage scavenger receptor type I, 3'untranslated region
D13265.1 Homo sapiens mRNA for macrophage scavenger receptor type II, 3' untranslated region
D90187.1 Homo sapiens phSR1 mRNA for scavenger receptor type I, complete cds P
D90188.1 Homo sapiens phSR2 mRNA for scavenger receptor type II, complete cds P
AF037351.1 Homo sapiens macrophage scavenger receptor type III (SR-A) mRNA, complete cds P

EST sequences (10 of 79) [Show all sequences]

BX089209.1 Clone IMAGp998A155843_;_IMAGE:2354198 vascular P
AI299239.1 Clone IMAGE:1900082 kidney 3' read
AI734941.1 Clone IMAGE:2354198 vascular 3' read P
AI770104.1 Clone IMAGE:2403538 kidney 3' read A
AI940231.1 intestine
CB990950.1 Clone IMAGE:30334838 placenta 5' read P
CB997441.1 Clone IMAGE:30332218 placenta 5' read P
CD171799.1 Clone IMAGE:30378951 testis 5' read
CD365565.1 Clone UI-H-FT2-bjk-e-15-0-UI lung 3' read PA
CD366801.1 Clone UI-H-FT2-bjo-n-10-0-UI lung 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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