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UGID:151296     UniGene Hs.143766     Homo sapiens (human)   ATN1
Atrophin 1 (ATN1)

Human protein-coding gene ATN1. Represented by 477 ESTs from 235 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 151296 - Hs.143766]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001931.2 ATN1 gene product H. sapiens 100.0 1189
NP_001029337.1 ATN1 gene product P. troglodytes 100.0 1185
NP_031907.2 Atn1 gene product M. musculus 96.5 1174
XP_001922781.2 PREDICTED: arginine-glutamic acid dipeptide repeats protein D. rerio 60.0 847
NP_001090596.1 arginine-glutamic acid dipeptide (RE) repeats X. laevis 58.6 861
XP_001695130.1 cell wall protein pherophorin-C10 C. reinhardtii 58.4 149
NP_609439.1 CG17108 D. melanogaster 53.8 288
NP_193252.5 bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein A. thaliana 47.9 167
NP_001255333.1 Protein GRSP-2, isoform b C. elegans 47.4 249
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_003905940.1 PREDICTED: atrophin-1 isoform 1 P. anubis 99.5 1184
XP_001118307.2 PREDICTED: atrophin-1 M. mulatta 99.0 968

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; eye; lung; intestine; mixed; uncharacterized tissue; skin; testis; placenta; epididymis; pharynx; liver; bladder; adrenal gland; blood; pancreas; cervix; thyroid; uterus; prostate; muscle; connective tissue; ovary; mammary gland; larynx; kidney; mouth; lymph node; bone; stomach; salivary gland; nerve; ganglia; pineal gland; ascites; vascular; pituitary gland
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12p13.31
UniSTS entry: Chr 12 RH11235 [Map Viewer]
UniSTS entry: Chr 12 STS-D31840
UniSTS entry: Chr 12 G28537
UniSTS entry: Chr 12 GDB:303913
UniSTS entry: Chr 12 AF021112
UniSTS entry: Chr 12 D12S755E
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

BC051795.2 Homo sapiens atrophin 1, mRNA (cDNA clone MGC:57647 IMAGE:4181592), complete cds PA
NM_001940.3 Homo sapiens atrophin 1 (ATN1), transcript variant 2, mRNA PA
NM_001007026.1 Homo sapiens atrophin 1 (ATN1), transcript variant 1, mRNA PA
U23851.1 Human atrophin-1 mRNA, complete cds P
Z22814.1 H.sapiens ORF, complete CDS P
D38529.1 Homo sapiens mRNA for DRPLA protein, complete cds PA
D31840.1 Homo sapiens DRPLA mRNA, complete cds P

EST sequences (10 of 477) [Show all sequences]

AA985328.1 Clone IMAGE:1629360 brain 3' read P
AA988158.1 Clone IMAGE:1603252 lung 3' read
AA988480.1 Clone IMAGE:1602997 lung 3' read
AI014861.1 Clone IMAGE:1622109 embryonic tissue 3' read
AI023481.1 Clone IMAGE:1654627 mixed 3' read
AI050664.1 Clone IMAGE:1639952 testis 3' read
AI056916.1 Clone IMAGE:1669611 brain 3' read
AI082449.1 Clone IMAGE:1661961 mixed 3' read A
AI092095.1 Clone IMAGE:1690916 mixed 3' read P
AI084480.1 Clone IMAGE:1662472 mixed 3' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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