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UGID:142837     UniGene Hs.100431     Homo sapiens (human)   CXCL13
Chemokine (C-X-C motif) ligand 13 (CXCL13)

Human protein-coding gene CXCL13. Represented by 108 ESTs from 36 cDNA libraries. Corresponds to reference sequence NM_006419.2. [UniGene 142837 - Hs.100431]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001147148.1 PREDICTED: c-X-C motif chemokine 13 P. troglodytes 100.0 108
NP_006410.1 CXCL13 gene product H. sapiens 100.0 108
Other hits (SpeciesId(%)Len(aa)
NP_001028052.1 CXCL13 gene product M. mulatta 93.6 108
XP_003898772.1 PREDICTED: c-X-C motif chemokine 13 P. anubis 91.7 108

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
Note: Highly represented (4.9 pct) in cDNA library dbEST:5051, BT0703.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; pharynx; mixed; mammary gland; lymph node; uterus; intestine; spleen; kidney; lung; prostate; stomach; heart; vascular; muscle; bone; embryonic tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4q21
UniSTS entry: Chr 4 D4S3265 [Map Viewer]
UniSTS entry: Chr 4 SHGC-59613 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AF029894.1 Homo sapiens Angie mRNA, complete cds P
NM_006419.2 Homo sapiens chemokine (C-X-C motif) ligand 13 (CXCL13), mRNA PA
CR407624.1 Homo sapiens full open reading frame cDNA clone RZPDo834C102D for gene CXCL13, chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) complete cds, without stopcodon P
BC012589.1 Homo sapiens chemokine (C-X-C motif) ligand 13, mRNA (cDNA clone MGC:13521 IMAGE:4246053), complete cds PA
AJ002211.1 Homo sapiens cDNA for a CXC chemokine P
AF044197.1 Homo sapiens B lymphocyte chemoattractant BLC mRNA, complete cds P

EST sequences (10 of 108) [Show all sequences]

AA983434.1 Clone IMAGE:1598831 uncharacterized tissue 3' read A
AI040146.1 Clone IMAGE:1658968 embryonic tissue 3' read A
CB046963.1 Clone IMAGE:3253110 kidney 3' read A
CB046964.1 Clone IMAGE:3253110 kidney 5' read P
AI150743.1 Clone IMAGE:1708426 heart 3' read A
BX089511.1 Clone IMAGp998F031853_;_IMAGE:753794 mixed P
AI214312.1 Clone IMAGE:1941694 uncharacterized tissue 3' read A
AI203175.1 Clone IMAGE:1942799 uncharacterized tissue 3' read
AI282093.1 Clone IMAGE:1899887 kidney 3' read A
AI360623.1 Clone IMAGE:2001747 lymph node 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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