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UGID:117777     UniGene Gga.1329     Gallus gallus (chicken)   ARNTL
Aryl hydrocarbon receptor nuclear translocator-like (ARNTL)

Chicken protein-coding gene ARNTL. Represented by 25 ESTs from 19 cDNA libraries. Corresponds to reference sequence NM_001001463.1. [UniGene 117777 - Gga.1329]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001001463.1 aryl hydrocarbon receptor nuclear translocator-like protein 1 G. gallus 100.0 632
XP_003206253.1 PREDICTED: aryl hydrocarbon receptor nuclear translocator-like M. gallopavo 99.5 632
NP_001169.3 aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform a H. sapiens 95.8 624
NP_031515.1 aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform 1 M. musculus 95.2 625
NP_571652.1 aryl hydrocarbon receptor nuclear translocator-like 1a D. rerio 92.8 625
NP_001089031.1 uncharacterized protein LOC503673 X. laevis 91.4 626
NP_524168.2 cycle D. melanogaster 57.9 406
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_002187715.1 PREDICTED: aryl hydrocarbon receptor nuclear translocator-like isoform 2 T. guttata 99.0 632
XP_003224223.1 PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1-like isoform 1 A. carolinensis 97.0 632

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: head; uncharacterized tissue; limb; mixed; bursa of Fabricius; embryonic tissue; thymus; small intestine; brain; muscle; testis; ovary; epiphyseal growth plate; heart
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_001001463.1 Gallus gallus aryl hydrocarbon receptor nuclear translocator-like (ARNTL), mRNA P
AF246957.1 Gallus gallus BMAL1b' (BMAL1) mRNA, complete cds P
AF193070.1 Gallus gallus bHLH-PAS transcription factor BMAL1 (BMAL1) mRNA, partial cds P
AF205219.1 Gallus gallus clock protein (BMAL1) mRNA, complete cds P

EST sequences (10 of 25) [Show all sequences]

CN235936.1 testis 5' read P
CO504708.1 Clone GGEZCB1013B05 muscle P
AM069381.1 Clone C0000874O15_T7 thymus P
AM068514.1 Clone C0000869G22_T7 thymus P
CV855350.1 embryonic tissue 5' read P
CV859367.1 embryonic tissue 5' read P
AJ443244.1 Clone 34g24r1 bursa of Fabricius
BU231204.1 Clone ChEST903n9 head 5' read
BU234218.1 Clone ChEST330n2 head 5' read P
BU250770.1 Clone ChEST246e18 uncharacterized tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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