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UGID:2442348     UniGene Dr.81074     Danio rerio (zebrafish)   cops5
COP9 constitutive photomorphogenic homolog subunit 5 (cops5)

Zebrafish protein-coding gene cops5. Represented by 79 ESTs from 32 cDNA libraries. Corresponds to reference sequence NM_200725.1. [UniGene 2442348 - Dr.81074]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_957019.1 COP9 signalosome complex subunit 5 D. rerio 100.0 333
XP_003205144.1 PREDICTED: COP9 signalosome complex subunit 5-like, partial M. gallopavo 99.7 283
XP_003219681.1 PREDICTED: COP9 signalosome complex subunit 5-like A. carolinensis 99.6 268
NP_006828.2 COP9 signalosome complex subunit 5 H. sapiens 99.1 333
NP_038743.1 COP9 signalosome complex subunit 5 M. musculus 98.8 333
NP_001086291.1 COP9 signalosome complex subunit 5 X. laevis 98.8 331
NP_477442.1 COP9 complex homolog subunit 5 D. melanogaster 82.2 321
NP_177279.1 COP9 signalosome complex subunit 5a A. thaliana 77.9 340
XP_001694818.1 COP signalosome subunit 5 C. reinhardtii 72.1 325
NP_500841.1 Protein CSN-5 C. elegans 69.0 319
XP_956786.1 COP9 signalosome complex subunit 5 N. crassa 62.8 306
NP_116659.1 Rpn11p S. cerevisiae 46.2 197
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
XP_001097856.1 PREDICTED: COP9 signalosome complex subunit 5 isoform 5 M. mulatta 99.1 333
XP_001162723.1 PREDICTED: COP9 signalosome complex subunit 5 isoform 7 P. troglodytes 99.1 333

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: reproductive system; brain; whole body; mixed; heart; olfactory rosettes; kidney; eye; inner ear; muscle; skin
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 24
UniSTS entry: fj46b10.x1
UniSTS entry: Ndufb11
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

BC059493.1 Danio rerio COP9 constitutive photomorphogenic homolog subunit 5, mRNA (cDNA clone MGC:73130 IMAGE:4789910), complete cds PA
NM_200725.1 Danio rerio COP9 constitutive photomorphogenic homolog subunit 5 (cops5), mRNA PA

EST sequences (10 of 79) [Show all sequences]

AW279879.1 brain 3' read PA
AW280811.1 brain 5' read P
AW281402.1 brain 5' read P
BI534279.1 Clone IMAGE:4967947 brain 3' read PA
BI839632.1 Clone IMAGE:4834052 brain 5' read P
BI840944.1 Clone IMAGE:4834052 brain 3' read PA
BI705837.1 Clone IMAGE:4789910 eye 5' read P
BI428767.1 Clone IMAGE:4966294 brain 3' read P
BM102185.1 Clone IMAGE:5386341 brain 3' read PA
BM102469.1 Clone IMAGE:5386341 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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