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UGID:2439415     UniGene Dr.78141     Danio rerio (zebrafish)   pdp1
Pyruvate dehyrogenase phosphatase catalytic subunit 1 (pdp1)

Zebrafish protein-coding gene pdp1. Represented by 18 ESTs from 13 cDNA libraries. Corresponds to reference sequence NM_001111158.1. [UniGene 2439415 - Dr.78141]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001104628.1 [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial D. rerio 100.0 518
NP_001028625.1 [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial isoform c M. musculus 78.4 490
NP_001155251.1 pyruvate dehyrogenase phosphatase catalytic subunit 1 isoform 2 H. sapiens 74.6 539
NP_001087690.1 pyruvate dehyrogenase phosphatase catalytic subunit 1 X. laevis 74.4 524
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003205234.1 PREDICTED: [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial-like, partial M. gallopavo 82.6 466
NP_001186839.1 pyruvate dehyrogenase phosphatase catalytic subunit 1 G. gallus 82.4 466

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
cDNA Sources: whole body; kidney; heart; reproductive system; uncharacterized tissue; gills; eye
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

BC155791.1 Danio rerio zgc:174908, mRNA (cDNA clone MGC:174908 IMAGE:7157162), complete cds PA
NM_001111158.1 Danio rerio pyruvate dehyrogenase phosphatase catalytic subunit 1 (pdp1), nuclear gene encoding mitochondrial protein, mRNA PA

EST sequences (10 of 18) [Show all sequences]

AI353989.1 heart 5' read P
AI617117.1 heart 5' read
AW306039.1 kidney 5' read
BI876371.1 Clone IMAGE:3819393 whole body 5' read P
BI884743.1 Clone IMAGE:4725270 kidney 5' read
BI884813.1 Clone IMAGE:4725269 kidney 5' read P
BM082541.1 Clone IMAGE:5306240 reproductive system 5' read P
BM861286.1 Clone IMAGE:5602902 whole body 5' read
BM958302.1 Clone IMAGE:5605419 whole body 5' read
AL918796.1 Clone 053-E08-2 whole body P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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