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UGID:2438893     UniGene Dr.77619     Danio rerio (zebrafish)   ruvbl1
RuvB-like 1 (E. coli) (ruvbl1)

Zebrafish protein-coding gene ruvbl1. Represented by 161 ESTs from 46 cDNA libraries. Corresponds to reference sequence NM_173835.3. [UniGene 2438893 - Dr.77619]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_776196.2 ruvB-like 1 D. rerio 100.0 455
NP_062659.1 ruvB-like 1 M. musculus 96.7 455
NP_003698.1 ruvB-like 1 H. sapiens 96.3 455
NP_001083856.1 ruvB-like 1 X. laevis 95.8 455
NP_652608.1 pontin D. melanogaster 88.3 455
XP_001696726.1 hypothetical protein CHLREDRAFT_192123 C. reinhardtii 81.9 454
NP_197625.1 RuvB-like protein 1 A. thaliana 81.6 457
NP_010476.1 Rvb1p S. cerevisiae 80.0 451
XP_955769.1 hypothetical protein NCU03482 N. crassa 79.8 450
NP_505567.1 RUVB (recombination protein) homolog family member (ruvb-1) C. elegans 70.6 435
Other hits (2 of 58) [Show all]SpeciesId(%)Len(aa)
XP_003441508.1 PREDICTED: ruvB-like 1-like O. niloticus 98.0 455
NP_671706.1 ruvB-like 1 R. norvegicus 96.7 455

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: whole body; reproductive system; muscle; mixed; uncharacterized tissue; kidney; brain; eye; fin; bone; gills; liver; olfactory rosettes
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
UniSTS entry: fc57g02.y1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AY092764.1 Danio rerio pontin mRNA, complete cds P
NM_173835.3 Danio rerio RuvB-like 1 (E. coli) (ruvbl1), mRNA PA
AY398410.1 Danio rerio clone RK138A4F02 RuvB-like 1 (RUVBL1) mRNA, complete cds PA
BC071316.1 Danio rerio RuvB-like 1 (E. coli), mRNA (cDNA clone MGC:86616 IMAGE:6892593), complete cds PA

EST sequences (10 of 161) [Show all sequences]

AI584574.1 Clone IMAGE:3719670 mixed 3' read PA
AI585221.1 Clone IMAGE:3719670 mixed 5' read P
AI721333.1 Clone IMAGE:2351934 whole body 3' read P
AI722028.1 Clone IMAGE:2351934 whole body 5' read P
AI794615.1 Clone IMAGE:3724443 mixed 5' read P
AI878120.1 Clone IMAGE:3725522 mixed 5' read P
AI883918.1 Clone IMAGE:3724443 mixed 3' read PA
BI888287.1 Clone MPMGp637_18C6;MPMGp637C0618 whole body 5' read P
BM034999.1 Clone IMAGE:5305343 reproductive system 3' read PA
BM036043.1 Clone IMAGE:5305343 reproductive system 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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