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UGID:2437363     UniGene Dr.76089     Danio rerio (zebrafish)   zgc:77702
Zgc:77702 (zgc:77702)

Zebrafish protein-coding gene zgc:77702. Represented by 207 ESTs from 46 cDNA libraries. Corresponds to reference sequence NM_200845.1. [UniGene 2437363 - Dr.76089]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_957139.1 40S ribosomal protein S17 D. rerio 100.0 133
NP_033118.1 40S ribosomal protein S17 M. musculus 96.3 134
NP_001085933.1 ribosomal protein S17 X. laevis 96.3 134
NP_001185986.1 40S ribosomal protein S17-like H. sapiens 96.3 134
NP_491795.1 Protein RPS-17 C. elegans 82.8 116
NP_524002.1 ribosomal protein S17 D. melanogaster 82.1 123
XP_001702348.1 ribosomal protein S17, component of cytosolic 80S ribosome and 40S small subunit C. reinhardtii 77.1 131
XP_961835.1 40S ribosomal protein S17 N. crassa 76.7 129
NP_187672.1 40S ribosomal protein S17-3 A. thaliana 73.4 139
NP_010735.1 Rps17bp S. cerevisiae 73.2 112
Other hits (2 of 59) [Show all]SpeciesId(%)Len(aa)
XP_003209359.1 PREDICTED: 40S ribosomal protein S17-like, partial M. gallopavo 97.0 100
NP_058848.2 40S ribosomal protein S17 R. norvegicus 96.3 134

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: muscle; reproductive system; whole body; mixed; brain; fin; uncharacterized tissue; liver; eye; heart; lymphoreticular; olfactory rosettes; bone; gills; skin
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

BC062279.1 Danio rerio zgc:77702, mRNA (cDNA clone MGC:77702 IMAGE:6997693), complete cds PA
NM_200845.1 Danio rerio zgc:77702 (zgc:77702), mRNA PA

EST sequences (10 of 207) [Show all sequences]

AI106178.1 heart 5' read P
AI106266.1 heart 5' read P
AI331010.1 fin 5' read P
AI331475.1 fin 5' read P
AI332083.1 fin 3' read P
AI353430.1 heart 5' read PA
AI353683.1 heart 5' read P
AI558592.1 Clone IMAGE:3717012 mixed 5' read PA
AI618160.1 heart 5' read P
AI957937.1 Clone IMAGE:3730316 mixed 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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