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UGID:104427     UniGene Dr.6574     Danio rerio (zebrafish)   ercc3
Excision repair cross-complementing rodent repair deficiency, complementation group 3 (ercc3)

Zebrafish protein-coding gene ercc3. Represented by 33 ESTs from 16 cDNA libraries. EST representation biased toward gastrula. Corresponds to reference sequence NM_201582.1. [UniGene 104427 - Dr.6574]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_963876.1 TFIIH basal transcription factor complex helicase XPB subunit D. rerio 100.0 781
NP_000113.1 TFIIH basal transcription factor complex helicase XPB subunit H. sapiens 90.4 781
NP_598419.1 TFIIH basal transcription factor complex helicase XPB subunit M. musculus 90.2 782
XP_001691150.1 hypothetical protein CHLREDRAFT_181520 C. reinhardtii 77.0 61
NP_001137931.1 haywire, isoform B D. melanogaster 72.4 790
NP_499487.1 Protein Y66D12A.15 C. elegans 66.9 784
NP_568591.1 DNA repair helicase XPB2 A. thaliana 57.5 758
NP_012123.1 Ssl2p S. cerevisiae 56.7 783
XP_957329.1 DNA repair helicase RAD25 N. crassa 53.6 763
Other hits (2 of 52) [Show all]SpeciesId(%)Len(aa)
XP_003445775.1 PREDICTED: TFIIH basal transcription factor complex helicase XPB subunit-like isoform 1 O. niloticus 94.2 782
XP_001488557.2 PREDICTED: TFIIH basal transcription factor complex helicase XPB subunit-like E. caballus 91.6 703

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: gastrula [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: reproductive system; whole body; mixed; muscle; brain; kidney
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
UniSTS entry: AI723106
UniSTS entry: fc25f08.x1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

BC045400.1 Danio rerio excision repair cross-complementing rodent repair deficiency, complementation group 3, mRNA (cDNA clone MGC:55607 IMAGE:2643969), complete cds PA
NM_201582.1 Danio rerio excision repair cross-complementing rodent repair deficiency, complementation group 3 (ercc3), mRNA PA
BC165665.1 Danio rerio excision repair cross-complementing rodent repair deficiency, complementation group 3, mRNA (cDNA clone MGC:192753 IMAGE:100061218), complete cds P

EST sequences (10 of 33) [Show all sequences]

AI721958.1 Clone IMAGE:3722439 mixed 3' read P
AI723106.1 Clone IMAGE:3722439 mixed 5' read P
AW059019.1 Clone IMAGE:3739722 mixed 3' read PA
AW128421.1 Clone IMAGE:3738954 mixed 5' read P
AW128669.1 Clone IMAGE:3739268 mixed 5' read P
AW342615.1 Clone IMAGE:2643981 whole body 3' read P
AW343490.1 Clone IMAGE:2643969 whole body 5' read P
BI891104.1 Clone MPMGp637_13G7;MPMGp637G0713 whole body 5' read P
AL924957.1 Clone 148-D01-2 whole body P
CK024666.1 Clone IMAGE:7050618 whole body 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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