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UGID:103737     UniGene Dr.5194     Danio rerio (zebrafish)   ankrd13c
Ankyrin repeat domain 13C (ankrd13c)

Zebrafish protein-coding gene ankrd13c. Represented by 74 ESTs from 31 cDNA libraries. EST representation biased toward egg. Corresponds to reference sequence NM_214690.1. [UniGene 103737 - Dr.5194]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_999855.1 ankyrin repeat domain-containing protein 13C D. rerio 100.0 487
NP_001084851.1 ankyrin repeat domain-containing protein 13C-A X. laevis 91.2 509
NP_110443.3 ankyrin repeat domain-containing protein 13C H. sapiens 90.2 540
NP_001013828.1 ankyrin repeat domain-containing protein 13C M. musculus 89.8 540
NP_611295.1 CG5742 D. melanogaster 58.8 458
NP_494753.3 Protein C01F1.6 C. elegans 53.9 431
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
XP_003585521.1 PREDICTED: ankyrin repeat domain-containing protein 13C-like, partial B. taurus 97.5 157
XP_001505532.2 PREDICTED: ankyrin repeat domain-containing protein 13C O. anatinus 96.2 399

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: egg [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: whole body; mixed; reproductive system; brain; eye; olfactory rosettes; kidney; fin; liver; muscle; heart
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
UniSTS entry: Chr 11 fc57c01 [Map Viewer]
UniSTS entry: z36127
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

BC047821.1 Danio rerio zgc:56077, mRNA (cDNA clone MGC:56077 IMAGE:5410010), complete cds PA
NM_214690.1 Danio rerio ankyrin repeat domain 13C (ankrd13c), mRNA PA
BC161648.1 Danio rerio zgc:56077, mRNA (cDNA clone IMAGE:7120835), complete cds PA

EST sequences (10 of 74) [Show all sequences]

AI657552.1 Clone IMAGE:3721422 mixed 5' read P
AI721662.1 Clone IMAGE:3722927 mixed 3' read A
AI722716.1 Clone IMAGE:3722927 mixed 5' read P
AI878081.1 Clone IMAGE:3725472 mixed 5' read
AI878391.1 Clone IMAGE:3725472 mixed 3' read A
AI883630.1 Clone IMAGE:3726527 mixed 5' read P
AI641434.1 Clone IMAGE:3721422 mixed 3' read A
AW466786.1 fin 3' read
BG306408.1 Clone IMAGE:4199591 eye 3' read A
BG308225.1 Clone IMAGE:4199591 eye 5' read P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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