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UGID:2823101     UniGene Bt.91476     Bos taurus (cow)   COL4A4
Collagen, type IV, alpha 4 (COL4A4)

Cow protein-coding gene COL4A4. Represented by 10 ESTs from 6 cDNA libraries. [UniGene 2823101 - Bt.91476]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_002703762.2 PREDICTED: LOW QUALITY PROTEIN: collagen alpha-4(IV) chain, partial B. taurus 86.4 397
NP_031761.1 collagen alpha-4(IV) chain precursor M. musculus 61.0 1597
NP_000083.3 collagen alpha-4(IV) chain precursor H. sapiens 59.8 1592
NP_001089312.1 collagen, type IX, alpha 2 precursor X. laevis 45.1 277
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001493888.1 PREDICTED: collagen alpha-4(IV) chain E. caballus 65.7 1590
XP_002712665.1 PREDICTED: alpha 4 type IV collagen-like O. cuniculus 64.6 1583

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
cDNA Sources: mixed; ovary; lens
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

M77480.1 Bos taurus alpha type IV collagen basement membrane (COL4A4) mRNA, partial cds P

EST sequences (10)

AW660114.1 mixed 5' read P
BM483303.1 mixed 5' read P
BI977121.1 mixed 5' read P
BM087351.1 mixed 5' read P
DN538000.1 mixed 5' read P
DN538203.1 mixed 5' read P
DN539414.1 mixed 3' read P
DN539624.1 mixed 3' read P
DY119020.1 ovary 5' read
EG707198.1 Clone nbm04c11 lens 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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