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UGID:1050296     UniGene At.48312     Arabidopsis thaliana (thale cress)   NAC1
NAC domain-containing protein 21/22 (NAC1)

Thale cress protein-coding gene NAC1. Represented by 65 ESTs from 13 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1050296 - At.48312]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_175997.1 NAC domain-containing protein 21/22 A. thaliana 100.0 323
Other hits (2 of 11) [Show all]SpeciesId(%)Len(aa)
NP_001238255.1 NAC domain protein G. max 75.7 300
XP_002310688.1 NAC domain protein, IPR003441 P. trichocarpa 75.6 299

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; unspecified tissue; root; whole plant; leaf; flower
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AF198054.1 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds PA
NM_104479.2 Arabidopsis thaliana NAC domain-containing protein 21/22 (NAC1) mRNA, complete cds P
AY085996.1 Arabidopsis thaliana clone 205648 mRNA, complete sequence P
BT005873.1 Arabidopsis thaliana At1g56010 gene, complete cds P
NM_179486.1 Arabidopsis thaliana NAC domain-containing protein 21/22 (NAC1) mRNA, complete cds P
AK228347.1 Arabidopsis thaliana mRNA for NAC1, complete cds, clone: RAFL14-76-M12 PA

EST sequences (10 of 65) [Show all sequences]

AV536694.1 Clone pAZNII0438R whole plant 5' read P
AV538912.1 Clone RZ124b03F root 3' read P
AV540514.1 Clone RZ151b06F root 3' read P
AU227062.1 Clone RAFL14-76-M12 root 3' read P
AU236225.1 Clone RAFL14-76-M12 root 5' read P
CF651858.1 Clone MPIZp2001E062Q root 5' read P
CD534774.1 leaf 3' read P
BP599185.1 Clone RAFL16-06-D01 unspecified tissue 3' read
BP607535.1 Clone RAFL16-75-E05 unspecified tissue 3' read
BP614362.1 Clone RAFL16-96-J22 unspecified tissue 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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