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UGID:7839     UniGene At.20208     Arabidopsis thaliana (thale cress)   AT5G57290
60S acidic ribosomal protein P3-2 (AT5G57290)

Thale cress protein-coding gene AT5G57290. Represented by 539 ESTs from 23 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 7839 - At.20208]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_200539.1 60S acidic ribosomal protein P3-2 A. thaliana 100.0 119
Other hits (2 of 9) [Show all]SpeciesId(%)Len(aa)
XP_002269613.1 PREDICTED: 60S acidic ribosomal protein P3-2 V. vinifera 75.8 120
XP_002314174.1 predicted protein P. trichocarpa 74.8 115

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; flower; floral meristem; unspecified tissue; root; inflorescence; seed; bud; leaf; cell culture; whole plant
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

NM_125111.4 Arabidopsis thaliana 60S acidic ribosomal protein P3-2 (AT5G57290) mRNA, complete cds P
AY088631.1 Arabidopsis thaliana clone 8695 mRNA, complete sequence P
BX833759.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL75ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) P
BX832953.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL25ZH01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) P
BX841742.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL68ZB02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) P
BT025594.1 Arabidopsis thaliana At5g57290 mRNA, complete cds P
AK227894.1 Arabidopsis thaliana mRNA for 60S acidic ribosomal protein P3, clone: RAFL14-46-K01 P
NM_001125979.1 Arabidopsis thaliana 60S acidic ribosomal protein P3-2 (AT5G57290) mRNA, complete cds P
NM_001125978.2 Arabidopsis thaliana 60S acidic ribosomal protein P3-2 (AT5G57290) mRNA, complete cds P

EST sequences (10 of 539) [Show all sequences]

N96427.1 Clone F1F7T7 seed P
AA728723.1 Clone K6B6TP inflorescence
AA597503.1 Clone 200E11T7 mixed
AV530728.1 Clone FB007h08F bud 3' read P
AI997264.1 Clone 701553048 root P
Z18207.1 Clone GAGa6 bud 5' read P
Z17971.1 Clone TASF037R cell culture 5' read
Z17905.1 Clone TASF037 cell culture 5' read P
AU226577.1 Clone RAFL14-46-K01 root 3' read
AU235812.1 Clone RAFL14-46-K01 root 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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