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PubMed Protein Genome Structure PopSet Taxonomy OMIM

Hydra magnipapillata: UniGene Build #28

Lineage: cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae; Hydridae; Hydra; Hydra magnipapillata

Sequences Included in UniGene
Known genes are from GenBank 04 Apr 2011
ESTs are from dbEST through 04 Apr 2011

343 mRNAs
6,722 Models
20 HTC
44,428 EST, 3'reads
88,389 EST, 5'reads
0 EST, other/unknown

139,902 total sequences in clusters

Build Method: Transcript Based

Alignments between all transcript sequences are used to generate clusters of sequences originating from the same gene.

Final Number of Clusters (sets)

10,473 sets total
275 sets contain at least one mRNA
19 sets contain at least one HTC sequence
10,418 sets contain at least one EST
220 sets contain both mRNAs and ESTs

Histogram of cluster sizes for UniGene Hma build 28
Cluster size Number of clusters

1025-2048 3
513-1024 13
257-512 30
129-256 101
65-128 177
33-64 355
17-32 812
9-16 1678
5-8 2808
3-4 2240
2 446
1 1810

Hydra magnipapillata is a freshwater hydrozoan that lives as a solitary polyp.

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