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PubMed Protein Genome Structure PopSet Taxonomy OMIM

Solanum lycopersicum: UniGene Build #38

Lineage: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon; Solanum lycopersicum

Sequences Included in UniGene
Known genes are from GenBank 02 Aug 2012
ESTs are from dbEST through 02 Aug 2012

5,061 mRNAs
0 Models
13,003 HTC
281 EST, 3'reads
185,109 EST, 5'reads
88,089 EST, other/unknown

291,543 total sequences in clusters

Build Method: Transcript Based

Alignments between all transcript sequences are used to generate clusters of sequences originating from the same gene.

Final Number of Clusters (sets)

18,051 sets total
3,367 sets contain at least one mRNA
10,410 sets contain at least one HTC sequence
17,573 sets contain at least one EST
3,099 sets contain both mRNAs and ESTs

Histogram of cluster sizes for UniGene Les build 38
Cluster size Number of clusters

2049-4096 1
1025-2048 1
513-1024 7
257-512 42
129-256 149
65-128 451
33-64 1302
17-32 2613
9-16 3818
5-8 3905
3-4 3769
2 990
1 1003

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