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PubMed Protein Genome Structure PopSet Taxonomy OMIM

Arachis hypogea: UniGene Build #4

Lineage: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis; Arachis hypogaea

Sequences Included in UniGene
Known genes are from GenBank 18 Jul 2012
ESTs are from dbEST through 18 Jul 2012

87,405 mRNAs
0 Models
160 HTC
1,550 EST, 3'reads
48,853 EST, 5'reads
31,035 EST, other/unknown

169,003 total sequences in clusters

Build Method: Transcript Based

Alignments between all transcript sequences are used to generate clusters of sequences originating from the same gene.

Final Number of Clusters (sets)

52,468 sets total
50,775 sets contain at least one mRNA
153 sets contain at least one HTC sequence
17,182 sets contain at least one EST
15,489 sets contain both mRNAs and ESTs

Histogram of cluster sizes for UniGene Ahy build 4
Cluster size Number of clusters

2049-4096 2
1025-2048 3
513-1024 3
257-512 7
129-256 16
65-128 55
33-64 212
17-32 687
9-16 2424
5-8 5019
3-4 6161
2 6158
1 31721

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