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PubMed Protein Genome Structure PopSet Taxonomy OMIM

Mus musculus: UniGene Build #194

Lineage: cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus musculus

Sequences Included in UniGene
Known genes are from GenBank 25 Jan 2013
ESTs are from dbEST through 25 Jan 2013

108,447 mRNAs
256 Models
121,538 HTC
1,485,702 EST, 3'reads
2,141,921 EST, 5'reads
365,761 EST, other/unknown

4,223,625 total sequences in clusters

Build Method: Genome Based

Alignments between transcript sequences and genomic sequences are used to generate clusters of sequences originating from the same gene.

Final Number of Clusters (sets)

80,240 sets total
25,473 sets contain at least one mRNA
27,071 sets contain at least one HTC sequence
77,286 sets contain at least one EST
23,026 sets contain both mRNAs and ESTs

Histogram of cluster sizes for UniGene Mm build 194
Cluster size Number of clusters

8193-16384 3
4097-8192 14
2049-4096 81
1025-2048 280
513-1024 1082
257-512 3128
129-256 4635
65-128 4021
33-64 3607
17-32 3722
9-16 4896
5-8 6640
3-4 8675
2 6509
1 32947

UniGene Links
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Other Links
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NIH cDNA Projects

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