JAKMUW000000000.1 Corynebacterium sp. c19Ua_109
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# of Contigs: 32 # of Proteins: 2,431 Total length: 2,660,928 bp BioProject: PRJNA548360 BioSample: SAMN25350284 Keywords: WGS Annotation: Contigs Organism: Corynebacterium sp. c19Ua_109 – show lineagehide lineage Biosource: /collection_date = 2017-11/country = Portugal: Porto/host = Homo sapiens/isolation_source = urine/mol_type = genomic/strain = c19Ua_109WGS: JAKMUW010000001:JAKMUW010000032 Reference: Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species : Microorganisms 11 (2), 388 (2023) – show 6 authorshide authorsCappelli,E.A., Ksiezarek,M., Wolf,J., Neumann-Schaal,M., Ribeiro,T.G., Peixe,L.Submission: Submitted (01-FEB-2022) Microbiology, i4HB-UCIBIO-REQUIMTE. Faculty of Pharmacy, University of Porto, R. Jorge Viterbo Ferreira, 228, Porto 4050-313, Portugal – Cappelli,E.A., Ribeiro,T.G., Peixe,L.The Corynebacterium sp. c19Ua_109 whole genome shotgun (WGS) project has the project accession JAKMUW000000000. This version of the project (01) has the accession number JAKMUW010000000, and consists of sequences JAKMUW010000001-JAKMUW010000032.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START## Annotation Provider : NCBI Annotation Date : 02/02/2022 16:30:18 Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method : Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision : 6.0 Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) : 2,523 CDSs (total) : 2,465 Genes (coding) : 2,431 CDSs (with protein) : 2,431 Genes (RNA) : 58 rRNAs : 1, 2, 1 (5S, 16S, 23S) complete rRNAs : 1 (23S) partial rRNAs : 1, 2 (5S, 16S) tRNAs : 51 ncRNAs : 3 Pseudo Genes (total) : 34 CDSs (without protein) : 34 Pseudo Genes (ambiguous residues) : 0 of 34 Pseudo Genes (frameshifted) : 12 of 34 Pseudo Genes (incomplete) : 25 of 34 Pseudo Genes (internal stop) : 2 of 34 Pseudo Genes (multiple problems) : 5 of 34 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method : Unicycler v. 0.4.8 Genome Representation : Full Expected Final Version : Yes Genome Coverage : 664.0x Sequencing Technology : Illumina NovaSeq ##Genome-Assembly-Data-END## - Contigs
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Contigs:
GenBank:JAKMUW01.1.gbff.gz 1.8 MbFASTA:JAKMUW01.1.fsa_nt.gz 804.4 kbASN.1:JAKMUW01.1.bbs.gz 1.6 MbProteins:
GenPept:JAKMUW01.1.gnp.gz 921.1 kbFASTA:JAKMUW01.1.fsa_aa.gz 506.2 kb- History
Minor Version Create Date 0 01/04/2023 1 01/04/2023 2 02/13/2023 3 02/16/2023