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JAKMUT000000000.1 Corynebacterium sp. c8Ua_174

Master
# of Contigs: 28
# of Proteins: 1,922
Total length: 2,255,182 bp
BioProject: PRJNA548360
BioSample: SAMN25350281
Keywords: WGS
Annotation: Contigs
Organism: Corynebacterium sp. c8Ua_174show lineagehide lineage
Biosource:
/collection_date = 2017-02
/country = Portugal: Porto
/host = Homo sapiens
/isolation_source = urine
/mol_type = genomic
/strain = c8Ua_174
WGS: JAKMUT010000001:JAKMUT010000028
Reference:
Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species : Microorganisms 11 (2), 388 (2023) – show 6 authorshide authors
Cappelli,E.A., Ksiezarek,M., Wolf,J., Neumann-Schaal,M., Ribeiro,T.G., Peixe,L.
Submission:
Submitted (01-FEB-2022) Microbiology, i4HB-UCIBIO-REQUIMTE. Faculty of Pharmacy, University of Porto, R. Jorge Viterbo Ferreira, 228, Porto 4050-313, Portugal – Cappelli,E.A., Ribeiro,T.G., Peixe,L.

The Corynebacterium sp. c8Ua_174 whole genome shotgun (WGS) project has the project accession JAKMUT000000000. This version of the project (01) has the accession number JAKMUT010000000, and consists of sequences JAKMUT010000001-JAKMUT010000028.

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 02/02/2022 16:26:42
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method : Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision : 6.0
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 1,999
CDSs (total) : 1,939
Genes (coding) : 1,922
CDSs (with protein) : 1,922
Genes (RNA) : 60
rRNAs : 2, 2, 3 (5S, 16S, 23S)
complete rRNAs : 2 (5S)
partial rRNAs : 2, 3 (16S, 23S)
tRNAs : 50
ncRNAs : 3
Pseudo Genes (total) : 17
CDSs (without protein) : 17
Pseudo Genes (ambiguous residues) : 0 of 17
Pseudo Genes (frameshifted) : 6 of 17
Pseudo Genes (incomplete) : 11 of 17
Pseudo Genes (internal stop) : 1 of 17
Pseudo Genes (multiple problems) : 1 of 17
##Genome-Annotation-Data-END##
##Genome-Assembly-Data-START##
Assembly Method : Unicycler v. 0.4.8
Genome Representation : Full
Expected Final Version : Yes
Genome Coverage : 657.0x
Sequencing Technology : Illumina NovaSeq
##Genome-Assembly-Data-END##
Contigs
Proteins
Download

Contigs:

GenBank:JAKMUT01.1.gbff.gz 1.5 Mb
FASTA:JAKMUT01.1.fsa_nt.gz 677.3 kb
ASN.1:JAKMUT01.1.bbs.gz 1.3 Mb

Proteins:

GenPept:JAKMUT01.1.gnp.gz 764.8 kb
FASTA:JAKMUT01.1.fsa_aa.gz 428.6 kb
History
Minor Version Create Date
0 01/04/2023
1 01/04/2023
2 02/13/2023
3 02/16/2023