JABERD000000000.1 Streptomyces sp. S3(2020)
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# of Contigs: 569 # of Proteins: 9,644 Total length: 10,988,816 bp BioProject: PRJNA605351 BioSample: SAMN14775387 Keywords: WGS Annotation: Contigs Organism: Streptomyces sp. S3(2020) – show lineagehide lineage Biosource: /collected_by = Prof. Luciano Huergo/collection_date = 25-Oct-2016/country = Brazil: Guaratuba Samaqui Boguacu/identified_by = Prof. Luciano Huergo/lat_lon = 25.55 S 48.37 W/mol_type = genomic/strain = S3(2020)WGS: JABERD010000001:JABERD010000569 Reference: Ancient anthropogenic waste deposit as a source of recalcitrant polysaccharides degrading Streptomyces : Unpublished – show 15 authorshide authorsHuergo,L.F., Conzentino,M., Goncalves,M.V., Gernet,M.V., Reis,R.A., Pedrosa,F.O., Souza,E.M., Baura,V.A., Pires,A., Gerhardt,E.C., Tuleski,T.R., Balsanelli,E., Guizelini,D., Chandra,G., Cruz,L.M.Submission: Submitted (03-MAY-2020) Setor Litoral, Federal University Parana, Rua Jaguariaiva, Matinhos, PR 83280000, Brazil – show 15 authorshide authorsHuergo,L.F., Conzentino,M., Goncalves,M.V., Gernet,M.V., Reis,R.A., Pedrosa,F.O., Souza,E.M., Baura,V.A., Pires,A., Gerhardt,E.C., Tuleski,T.R., Balsanelli,E., Guizelini,D., Chandra,G., Cruz,L.M.The Streptomyces sp. S3(2020) whole genome shotgun (WGS) project has the project accession JABERD000000000. This version of the project (10) has the accession number JABERD010000000, and consists of sequences JABERD010000001-JABERD010000569.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Microbial Culture Colection Setor Litoral UFPR - Streptomyces S3.
##Genome-Annotation-Data-START## Annotation Provider : NCBI Annotation Date : 05/06/2020 07:09:09 Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method : Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision : 4.11 Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) : 10,122 CDSs (total) : 10,037 Genes (coding) : 9,644 CDSs (with protein) : 9,644 Genes (RNA) : 85 rRNAs : 6, 2, 4 (5S, 16S, 23S) complete rRNAs : 5, 1 (5S, 16S) partial rRNAs : 1, 1, 4 (5S, 16S, 23S) tRNAs : 70 ncRNAs : 3 Pseudo Genes (total) : 393 CDSs (without protein) : 393 Pseudo Genes (ambiguous residues) : 0 of 393 Pseudo Genes (frameshifted) : 92 of 393 Pseudo Genes (incomplete) : 316 of 393 Pseudo Genes (internal stop) : 37 of 393 Pseudo Genes (multiple problems) : 46 of 393 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Date : 28-APR-2020 Assembly Method : SPAdes v. January-2020 Genome Representation : Full Expected Final Version : Yes Genome Coverage : 80.0x Sequencing Technology : Illumina MiSeq ##Genome-Assembly-Data-END## - Contigs
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Contigs:
GenBank:JABERD01.1.gbff.gz 7.8 MbFASTA:JABERD01.1.fsa_nt.gz 3.1 MbASN.1:JABERD01.1.bbs.gz 6.6 MbProteins:
GenPept:JABERD01.1.gnp.gz 3.5 MbFASTA:JABERD01.1.fsa_aa.gz 1.9 Mb