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Sequence Set Browser

 

NZ_ABFS00000000.1 Streptococcus pneumoniae CDC1873-00

Master
# of Scaffolds/Chrs: 53
BioProject: PRJNA224116
BioSample: SAMN00000215
Assembly: GCF_000171575.1
Keywords: WGS
Annotation: Scaffolds
Organism: Streptococcus pneumoniae CDC1873-00show lineagehide lineage
Biosource:
/mol_type = genomic genomic
/strain = CDC1873-00
WGS: ABFS01000001:ABFS01000053
Scaffolds: NZ_ABFS01000001:NZ_ABFS01000053
53 scaffolds, 2,249 proteins, total length is 2,263,323 bases
Reference:
Genome Sequence of Streptococcus pneumoniae CDC1873-00 : Unpublished – show 10 authorshide authors
Dunning Hotopp,J., Dodson,R., Masignani,V., Coan,P., Kumar,N., Covacci,A., Beall,B., Rappuoli,R., Hollingshead,S., Tettelin,H.
Submission:
Submitted (17-SEP-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – show 8 authorshide authors
Dunning Hotopp,J., Coan,P., Beall,B., Covacci,A., Rappuoli,R., Masignani,V., Hollingshead,S., Tettelin,H.

The Streptococcus pneumoniae CDC1873-00 whole genome shotgun (WGS) project has the project accession NZ_ABFS00000000. This version of the project (01) has the accession number NZ_ABFS01000000, and consists of sequences ABFS01000001-ABFS01000053.

Annotation was added to the contigs in April 2008.

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 03/06/2017 11:08:44
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.1
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 2,532
CDS (total) : 2,452
Genes (coding) : 2,213
CDS (coding) : 2,213
Genes (RNA) : 80
rRNAs : 6, 6, 6 ( 5S, 16S, 23S )
complete rRNAs : 4, 6, 6 ( 5S, 16S, 23S )
partial rRNAs : 2 ( 5S )
tRNAs : 59
ncRNAs : 3
Pseudo Genes (total) : 239
Pseudo Genes (ambiguous residues) : 0 of 239
Pseudo Genes (frameshifted) : 154 of 239
Pseudo Genes (incomplete) : 78 of 239
Pseudo Genes (internal stop) : 60 of 239
Pseudo Genes (multiple problems) : 44 of 239
##Genome-Annotation-Data-END##