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Sequence Set Browser

 

NZ_ABCM00000000.1 Pedobacter sp. BAL39

Master
# of Scaffolds/Chrs: 47
BioProject: PRJNA224116
BioSample: SAMN02436100
Assembly: GCF_000170795.1
Keywords: WGS
Annotation: Scaffolds
Organism: Pedobacter sp. BAL39show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = BAL39
WGS: ABCM01000001:ABCM01000047
Scaffolds: NZ_ABCM01000001:NZ_ABCM01000047
47 scaffolds, 4,746 proteins, total length is 5,788,054 bases
Submission:
Submitted (08-JUN-2007) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – show 10 authorshide authors
Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M., Venter,J.C.

The Pedobacter sp. BAL39 whole genome shotgun (WGS) project has the project accession NZ_ABCM00000000. This version of the project (01) has the accession number NZ_ABCM01000000, and consists of sequences ABCM01000001-ABCM01000047.

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 05/15/2017 21:02:44
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.2
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 4,904
CDS (total) : 4,820
Genes (coding) : 4,760
CDS (coding) : 4,760
Genes (RNA) : 84
rRNAs : 8, 6, 7 ( 5S, 16S, 23S )
complete rRNAs : 8, 5, 7 ( 5S, 16S, 23S )
partial rRNAs : 1 ( 16S )
tRNAs : 60
ncRNAs : 3
Pseudo Genes (total) : 60
Pseudo Genes (ambiguous residues) : 0 of 60
Pseudo Genes (frameshifted) : 22 of 60
Pseudo Genes (incomplete) : 39 of 60
Pseudo Genes (internal stop) : 7 of 60
Pseudo Genes (multiple problems) : 8 of 60
##Genome-Annotation-Data-END##