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Sequence Set Browser


NZ_ABAO00000000.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701

# of Scaffolds/Chrs: 113
BioProject: PRJNA224116
BioSample: SAMN02415273
Assembly: GCF_000170255.1
Keywords: WGS
Annotation: Scaffolds
Organism: Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701show lineagehide lineage
/mol_type = genomic genomic
/serovar = 4,[5],12:i:-
/strain = CVM23701
/sub_species = enterica
WGS: ABAO01000001:ABAO01000113
Scaffolds: NZ_ABAO01000001:NZ_ABAO01000113
113 scaffolds, 4,598 proteins, total length is 4,895,918 bases
Annotation of Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 : Unpublished – show 9 authorshide authors
Ravel,J., Fricke,W.F., White,D., McDermott,P., Mammel,M., Rosovitz,M., Leclerc,J., Cebula,T., Sebastian,Y.
Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution : J. Bacteriol. 193 (14), 3556-3568 (2011) – show 8 authorshide authors
Fricke,W.F., Mammel,M.K., McDermott,P.F., Tartera,C., White,D.G., Leclerc,J.E., Ravel,J., Cebula,T.A.
Submitted (26-APR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – show 7 authorshide authors
Rosovitz,M.J., McDermott,P., White,D., LeClerc,J.E., Mammel,M.K., Cebula,T.A., Ravel,J.

The Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 whole genome shotgun (WGS) project has the project accession NZ_ABAO00000000. This version of the project (01) has the accession number NZ_ABAO01000000, and consists of sequences ABAO01000001-ABAO01000113.

Salmonella enterica subsp. enterica serovar 4,[5],12:i:- was first identified in the U.S. in 1998 and became the 14th most common serotype recovered from human illness in 2002. In 1998, this was the 4th most commonly identified serotype in Spain. Pulsed field gel electrophoresis (PFGE) patterns for most 4,[5],12:i:- isolates suggests evolutionary links with Salmonella Typhimurium. Annotation added to contigs in September 2008.

Annotation Provider : NCBI
Annotation Date : 11/15/2017 11:39:25
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.3
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 5,081
CDS (total) : 5,028
Genes (coding) : 4,773
CDS (coding) : 4,773
Genes (RNA) : 53
rRNAs :
complete rRNAs :
partial rRNAs :
tRNAs : 40
ncRNAs : 13
Pseudo Genes (total) : 255
Pseudo Genes (ambiguous residues) : 0 of 255
Pseudo Genes (frameshifted) : 110 of 255
Pseudo Genes (incomplete) : 143 of 255
Pseudo Genes (internal stop) : 52 of 255
Pseudo Genes (multiple problems) : 45 of 255
CRISPR Arrays : 2